Basic Information
Gene Model:Bol023161
Gene Family:Transcription Factor Families
Chromosome:C01
Scaffold:Scaffold000102
Sequence:
 | 
Gene Structure
Nucleotide Length:1955 bp
Transcript Length:1875 bp
Protein Length:624 aa
Strand:-
Location:C01: 36907145 : 36909099
Gene CDSs(2): 1-1420 | 1501-1955 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMSmartSM00338no description 173 237 3.5e-16IPR004827Basic-leucine zipper (bZIP) transcription factor
HMMPantherPTHR13301:SF1TGACG-MOTIF-BINDING 174 238 9.4e-07Not foundNot found
HMMPantherPTHR13301X-BOX TRANSCRIPTION 174 238 9.4e-07Not foundNot found
Gene3DG3DSA:1.20.5.170no description 177 238 0.00063Not foundNot found
Segsegseg 298 315 NANot foundNot found
Segsegseg 133 154 NANot foundNot found
Segsegseg 241 274 NANot foundNot found
Segsegseg 57 79 NANot foundNot found
ProfileScanPS50217BZIP 175 238 10.105IPR004827Basic-leucine zipper (bZIP) transcription factor
HMMPfamPF00170bZIP_1 173 236 4.3e-12IPR011616bZIP transcription factor, bZIP-1
Coilcoilcoiled-coil 200 221 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
GO:0043565 Molecular Function sequence-specific DNA binding
GO:0046983 Molecular Function protein dimerization activity
Swiss-Prot
Best HitE_value Description
P142334e-17TGA1B_TOBAC TGACG-sequence-specific DNA-binding protein TGA-1B (Fragment) OS=Nicotiana tabacum GN=TGA1B PE=2 SV=1
TrEMBL
Best HitE_value Description
Q9SG860.0Q9SG86_ARATH Putative bZIP transcription factor OS=Arabidopsis thaliana GN=At3g10800 PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL12845(6 genes,5 taxa):Arabidopsis thalianaAT3G10800.1
ORTHOMCL12845(6 genes,5 taxa):Brassica oleraceaBol023161
ORTHOMCL12845(6 genes,5 taxa):Brassica rapaBra023224
ORTHOMCL12845(6 genes,5 taxa):Brassica rapaBra034147
ORTHOMCL12845(6 genes,5 taxa):Oryza sativaOs07t0644100-01
ORTHOMCL12845(6 genes,5 taxa):Sorghum bicolorSb02g041070.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:34734589..37387064 (-)A.thalianaChr3:3092023..4731803 (+)219
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:36818843..37987036 (+)B.rapaA05:1185540..2013688 (-)74
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
FAT3G1080033792543381621Chr3Subgenome_I279
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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