Basic Information
Gene Model:Bol023142
Gene Family:Protein Kinase Gene Families
Chromosome:C01
Scaffold:Scaffold000102
Sequence:
 | 
Gene Structure
Nucleotide Length:2677 bp
Transcript Length:1464 bp
Protein Length:487 aa
Strand:-
Location:C01: 37147329 : 37150005
Gene CDSs(11): 1-168 | 240-420 | 652-704 | 790-891 | 975-1083 | 1180-1258 | 1599-1764 | 1850-1984 | 2056-2219 | 2292-2514 | 2594-2677 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50011PROTEIN_KINASE_DOM 43 310 49.474IPR000719Protein kinase, catalytic domain
PatternScanPS00108PROTEIN_KINASE_ST 162 174 NAIPR008271Serine/threonine-protein kinase, active site
Segsegseg 359 372 NANot foundNot found
HMMSmartSM00219no description 43 304 1.6e-09IPR020635Tyrosine-protein kinase, subgroup, catalytic domain
HMMSmartSM00220no description 43 310 7.3e-91IPR002290Serine/threonine-protein kinase domain
superfamilySSF56112Protein kinase-like 18 337 3.1e-87IPR011009Protein kinase-like domain
HMMPantherPTHR22985:SF933-PHOSPHOINOSITIDE D 30 487 8.5e-238IPR015746Serine/threonine-protein kinase-1, 3-phosphoinositide dependent
HMMPantherPTHR22985SERINE/THREONINE PRO 30 487 8.5e-238Not foundNot found
Gene3DG3DSA:2.30.29.30no description 382 487 5.7e-32IPR011993Pleckstrin homology-type
Gene3DG3DSA:1.10.510.10no description 95 330 2.3e-66Not foundNot found
HMMPfamPF00069Pkinase 43 310 2e-84IPR017442Serine/threonine-protein kinase-like domain
Coilcoilcoiled-coil 467 488 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0004672 Molecular Function protein kinase activity
GO:0004674 Molecular Function protein serine/threonine kinase activity
GO:0005524 Molecular Function ATP binding
GO:0006468 Biological Process protein phosphorylation
Swiss-Prot
Best HitE_value Description
O551735e-82PDPK1_RAT 3-phosphoinositide-dependent protein kinase 1 OS=Rattus norvegicus GN=Pdpk1 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q4V3C80.0Q4V3C8_ARATH At3g10540 OS=Arabidopsis thaliana PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT3G105400.0K06276PDPK13-phosphoinositide dependent protein kinase-1
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1334(18 genes,8 taxa):Arabidopsis thalianaAT3G10540.1
ORTHOMCL1334(18 genes,8 taxa):Arabidopsis thalianaAT5G04510.1
ORTHOMCL1334(18 genes,8 taxa):Brassica oleraceaBol002441
ORTHOMCL1334(18 genes,8 taxa):Brassica oleraceaBol005845
ORTHOMCL1334(18 genes,8 taxa):Brassica oleraceaBol023142
ORTHOMCL1334(18 genes,8 taxa):Brassica rapaBra009447
ORTHOMCL1334(18 genes,8 taxa):Brassica rapaBra029850
ORTHOMCL1334(18 genes,8 taxa):Brassica rapaBra034125
ORTHOMCL1334(18 genes,8 taxa):Vitis viniferaGSVIVT01034673001
ORTHOMCL1334(18 genes,8 taxa):Oryza sativaOs01t0872800-01
ORTHOMCL1334(18 genes,8 taxa):Oryza sativaOs01t0872800-02
ORTHOMCL1334(18 genes,8 taxa):Populus trichocarpaPOPTR_0008s02890.1
ORTHOMCL1334(18 genes,8 taxa):Populus trichocarpaPOPTR_0008s02890.2
ORTHOMCL1334(18 genes,8 taxa):Populus trichocarpaPOPTR_0008s02890.3
ORTHOMCL1334(18 genes,8 taxa):Populus trichocarpaPOPTR_0010s23910.1
ORTHOMCL1334(18 genes,8 taxa):Populus trichocarpaPOPTR_0010s23910.2
ORTHOMCL1334(18 genes,8 taxa):Sorghum bicolorSb03g041290.1
ORTHOMCL1334(18 genes,8 taxa):Carica papayaevm.TU.supercontig_128.64
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:36927203..37287553 (-)A.thalianaChr5:1105410..1507224 (+)19
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:36954300..37283681 (+)B.rapaA10:3700698..4064885 (+)15
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
FAT3G1054032896953292702Chr3Subgenome_I279
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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