Basic Information
Gene Model:Bol023100
Gene Family:Not classificated
Chromosome:C01
Scaffold:Scaffold000102
Sequence:
 | 
Gene Structure
Nucleotide Length:1831 bp
Transcript Length:798 bp
Protein Length:265 aa
Strand:-
Location:C01: 37435401 : 37437231
Gene CDSs(8): 1-156 | 546-671 | 889-1051 | 1158-1252 | 1340-1408 | 1485-1529 | 1602-1664 | 1751-1831 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:1.20.5.110no description 181 240 3e-06Not foundNot found
ProfileScanPS50192T_SNARE 174 236 13.754IPR000727Target SNARE coiled-coil region
HMMPfamPF05739SNARE 179 241 3.7e-14IPR000727Target SNARE coiled-coil region
Coilcoilcoiled-coil 70 91 NANot foundNot found
HMMSmartSM00397no description 167 236 0.0044IPR000727Target SNARE coiled-coil region
HMMPantherPTHR12380SYNTAXIN 33 263 1.4e-09Not foundNot found
HMMPantherPTHR12380:SF10SYNTAXIN 6 33 263 1.4e-09Not foundNot found
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
Q9SF291e-145SYP71_ARATH Syntaxin-71 OS=Arabidopsis thaliana GN=SYP71 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q2HIU81e-144Q2HIU8_ARATH At3g09740 OS=Arabidopsis thaliana PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT3G097401e-144K08506SYP7syntaxin of plants SYP7
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL4835(11 genes,8 taxa):Arabidopsis thalianaAT3G09740.1
ORTHOMCL4835(11 genes,8 taxa):Brassica oleraceaBol011331
ORTHOMCL4835(11 genes,8 taxa):Brassica oleraceaBol023100
ORTHOMCL4835(11 genes,8 taxa):Brassica rapaBra029785
ORTHOMCL4835(11 genes,8 taxa):Brassica rapaBra034085
ORTHOMCL4835(11 genes,8 taxa):Vitis viniferaGSVIVT01025656001
ORTHOMCL4835(11 genes,8 taxa):Oryza sativaOs05t0553700-01
ORTHOMCL4835(11 genes,8 taxa):Populus trichocarpaPOPTR_0006s13150.1
ORTHOMCL4835(11 genes,8 taxa):Populus trichocarpaPOPTR_0016s08960.1
ORTHOMCL4835(11 genes,8 taxa):Sorghum bicolorSb09g027810.1
ORTHOMCL4835(11 genes,8 taxa):Carica papayaevm.TU.supercontig_435.2
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:37415750..37987036 (-)A.thalianaChr3:2496440..3023052 (+)64
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:37419658..37771661 (+)B.rapaA10:4330802..4888598 (+)18
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
FAT3G0974029894312991661Chr3Subgenome_I279
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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