Basic Information
Gene Model:Bol022975
Gene Family:Not classificated
Chromosome:C03
Scaffold:Scaffold000103
Sequence:
 | 
Gene Structure
Nucleotide Length:849 bp
Transcript Length:849 bp
Protein Length:282 aa
Strand:+
Location:C03: 22265878 : 22266726
Gene CDSs(1): 1-849 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR14155RING FINGER PROTEIN 86 153 9.3e-18Not foundNot found
HMMPantherPTHR14155:SF2RING FINGER PROTEIN 86 153 9.3e-18Not foundNot found
HMMPfamPF00097zf-C3HC4 112 153 1.3e-10IPR018957Zinc finger, C3HC4 RING-type
superfamilySSF57850RING/U-box 105 159 5.5e-16Not foundNot found
Segsegseg 34 47 NANot foundNot found
Segsegseg 59 69 NANot foundNot found
Gene3DG3DSA:3.30.40.10no description 105 159 4.6e-14Not foundNot found
ProfileScanPS50089ZF_RING_2 112 154 12.416IPR001841Zinc finger, RING-type
HMMSmartSM00184no description 112 153 1.2e-06IPR001841Zinc finger, RING-type
Gene Ontology
GO TermGO TypeDescription
GO:0005515 Molecular Function protein binding
GO:0008270 Molecular Function zinc ion binding
Swiss-Prot
Best HitE_value Description
Q8L9T51e-100ATL3F_ARATH RING-H2 finger protein ATL3F OS=Arabidopsis thaliana GN=ATL3F PE=2 SV=2
TrEMBL
Best HitE_value Description
Q4FE426e-99Q4FE42_ARATH At3g16720 OS=Arabidopsis thaliana PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
pfh:PFHG_022882e-09K10601SYVN1, HRD1E3 ubiquitin-protein ligase synoviolin
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL11610(7 genes,6 taxa):Arabidopsis thalianaAT3G16720.1
ORTHOMCL11610(7 genes,6 taxa):Brassica oleraceaBol022975
ORTHOMCL11610(7 genes,6 taxa):Brassica rapaBra001639
ORTHOMCL11610(7 genes,6 taxa):Vitis viniferaGSVIVT01028038001
ORTHOMCL11610(7 genes,6 taxa):Populus trichocarpaPOPTR_0002s23000.1
ORTHOMCL11610(7 genes,6 taxa):Populus trichocarpaPOPTR_0010s01400.1
ORTHOMCL11610(7 genes,6 taxa):Carica papayaevm.TU.supercontig_50.164
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:21661066..23820630 (+)A.thalianaChr3:5305926..6609295 (+)104
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:21661066..22404600 (+)B.rapaA05:2790255..3246712 (-)19
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
FAT3G1672056927385694127Chr3Subgenome_II468
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


logo