Basic Information
Gene Model:Bol022968
Gene Family:Transcription Factor Families
Chromosome:C03
Scaffold:Scaffold000103
Sequence:
 | 
Gene Structure
Nucleotide Length:2693 bp
Transcript Length:1941 bp
Protein Length:646 aa
Strand:+
Location:C03: 22362740 : 22365432
Gene CDSs(6): 1-69 | 176-1186 | 1394-1470 | 1533-1979 | 2065-2217 | 2510-2693 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS51294HTH_MYB 235 294 11.540IPR017930Myb-type HTH DNA-binding domain
ProfileScanPS50110RESPONSE_REGULATORY 37 152 31.592IPR001789Signal transduction response regulator, receiver region
HMMPIRPIRSF036392Response regulator, 4 643 2.5e-239IPR017053Response regulator, plant B-type
HMMPantherPTHR23283SENSOR HISTIDINE KIN 37 156 1.7e-17Not foundNot found
HMMPantherPTHR23283:SF21TWO-COMPONENT SYSTEM 37 156 1.7e-17Not foundNot found
Segsegseg 552 563 NANot foundNot found
Segsegseg 426 443 NANot foundNot found
Segsegseg 175 182 NANot foundNot found
Segsegseg 195 227 NANot foundNot found
Segsegseg 329 345 NANot foundNot found
Segsegseg 7 25 NANot foundNot found
HMMTigrTIGR01557myb_SHAQKYF: myb-lik 238 293 2.9e-30IPR006447Myb-like DNA-binding region, SHAQKYF class
Gene3DG3DSA:1.10.10.60no description 234 297 1.9e-23IPR012287Homeodomain-related
Gene3DG3DSA:3.40.50.2300no description 33 156 1.7e-28Not foundNot found
superfamilySSF46689Homeodomain-like 234 297 2.5e-20IPR009057Homeodomain-like
superfamilySSF52172CheY-like 33 159 4.9e-36IPR011006CheY-like
HMMPfamPF00249Myb_DNA-binding 240 290 1.4e-12IPR014778Myb, DNA-binding
HMMPfamPF00072Response_reg 38 149 8.6e-25IPR001789Signal transduction response regulator, receiver region
HMMSmartSM00448no description 36 148 7.4e-31IPR001789Signal transduction response regulator, receiver region
Gene Ontology
GO TermGO TypeDescription
GO:0000156 Molecular Function two-component response regulator activity
GO:0000160 Biological Process two-component signal transduction system (phosphorelay)
GO:0003677 Molecular Function DNA binding
GO:0006355 Biological Process regulation of transcription, DNA-dependent
GO:0045449 Biological Process regulation of transcription
Swiss-Prot
Best HitE_value Description
Q940D00.0ARR1_ARATH Two-component response regulator ARR1 OS=Arabidopsis thaliana GN=ARR1 PE=1 SV=2
TrEMBL
Best HitE_value Description
Q67YH90.0Q67YH9_ARATH Putative ARR1 protein OS=Arabidopsis thaliana GN=At3g16857 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT3G168570.0K14491ARR-Btwo-component response regulator ARR-B family
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL3097(13 genes,6 taxa):Arabidopsis thalianaAT3G16857.2
ORTHOMCL3097(13 genes,6 taxa):Brassica oleraceaBol020274
ORTHOMCL3097(13 genes,6 taxa):Brassica oleraceaBol022968
ORTHOMCL3097(13 genes,6 taxa):Brassica oleraceaBol036899
ORTHOMCL3097(13 genes,6 taxa):Brassica oleraceaBol037208
ORTHOMCL3097(13 genes,6 taxa):Brassica rapaBra001643
ORTHOMCL3097(13 genes,6 taxa):Brassica rapaBra012743
ORTHOMCL3097(13 genes,6 taxa):Brassica rapaBra022183
ORTHOMCL3097(13 genes,6 taxa):Brassica rapaBra033527
ORTHOMCL3097(13 genes,6 taxa):Vitis viniferaGSVIVT01035051001
ORTHOMCL3097(13 genes,6 taxa):Populus trichocarpaPOPTR_0008s22990.1
ORTHOMCL3097(13 genes,6 taxa):Populus trichocarpaPOPTR_0010s00320.1
ORTHOMCL3097(13 genes,6 taxa):Carica papayaevm.TU.supercontig_9.100
Tandem Duplication
ClusterGene Num.Gene List
Cluster_6902Bol022968 Bol022970 
Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:21661066..23820630 (+)A.thalianaChr3:5305926..6609295 (+)104
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:21661066..22404600 (+)B.rapaA05:2790255..3246712 (-)19
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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