Basic Information
Gene Model:Bol022964
Gene Family:Transcription Factor Families
Chromosome:C03
Scaffold:Scaffold000103
Sequence:
 | 
Gene Structure
Nucleotide Length:1463 bp
Transcript Length:858 bp
Protein Length:285 aa
Strand:+
Location:C03: 22381054 : 22382516
Gene CDSs(4): 1-261 | 366-580 | 666-948 | 1365-1463 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50863B3 184 277 9.418IPR003340Transcriptional factor B3
ProfileScanPS50863B3 19 114 13.493IPR003340Transcriptional factor B3
Segsegseg 164 181 NANot foundNot found
Gene3DG3DSA:2.40.330.10no description 177 279 0.00029Not foundNot found
Gene3DG3DSA:2.40.330.10no description 9 116 8e-19Not foundNot found
HMMPfamPF02362B3 186 279 5.1e-08IPR003340Transcriptional factor B3
HMMPfamPF02362B3 18 116 1.7e-22IPR003340Transcriptional factor B3
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q9LSP65e-75Y3701_ARATH B3 domain-containing protein At3g17010 OS=Arabidopsis thaliana GN=At3g17010 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q3E8F62e-21Q3E8F6_ARATH Putative uncharacterized protein At5g46915.1 OS=Arabidopsis thaliana GN=At5g46915 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL25576(2 genes,2 taxa):Brassica oleraceaBol022964
ORTHOMCL25576(2 genes,2 taxa):Brassica rapaBra001647
Tandem Duplication
ClusterGene Num.Gene List
Cluster_9662Bol022963 Bol022964 
Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:21661066..23820630 (+)A.thalianaChr3:5305926..6609295 (+)104
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:21661066..22404600 (+)B.rapaA05:2790255..3246712 (-)19
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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