Basic Information
Gene Model:Bol022963
Gene Family:Transcription Factor Families
Chromosome:C03
Scaffold:Scaffold000103
Sequence:
 | 
Gene Structure
Nucleotide Length:1303 bp
Transcript Length:888 bp
Protein Length:295 aa
Strand:+
Location:C03: 22385168 : 22386470
Gene CDSs(3): 1-261 | 334-957 | 1301-1303 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50863B3 1 82 12.872IPR003340Transcriptional factor B3
ProfileScanPS50863B3 194 288 10.771IPR003340Transcriptional factor B3
Segsegseg 168 191 NANot foundNot found
Segsegseg 129 139 NANot foundNot found
Gene3DG3DSA:2.40.330.10no description 4 84 1e-15Not foundNot found
HMMPfamPF02362B3 196 290 1.4e-12IPR003340Transcriptional factor B3
HMMPfamPF02362B3 7 84 2.5e-17IPR003340Transcriptional factor B3
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q9LSP61e-70Y3701_ARATH B3 domain-containing protein At3g17010 OS=Arabidopsis thaliana GN=At3g17010 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q3E8F68e-17Q3E8F6_ARATH Putative uncharacterized protein At5g46915.1 OS=Arabidopsis thaliana GN=At5g46915 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL18434(3 genes,3 taxa):Arabidopsis thalianaAT3G17010.1
ORTHOMCL18434(3 genes,3 taxa):Brassica oleraceaBol022963
ORTHOMCL18434(3 genes,3 taxa):Brassica rapaBra001648
Tandem Duplication
ClusterGene Num.Gene List
Cluster_9662Bol022963 Bol022964 
Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:21661066..23820630 (+)A.thalianaChr3:5305926..6609295 (+)104
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:21661066..22404600 (+)B.rapaA05:2790255..3246712 (-)19
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
FAT3G1701058004605802468Chr3Subgenome_II468
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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