Basic Information
Gene Model:Bol022925
Gene Family:Transcription Factor Families
Chromosome:C03
Scaffold:Scaffold000103
Sequence:
 | 
Gene Structure
Nucleotide Length:777 bp
Transcript Length:447 bp
Protein Length:148 aa
Strand:+
Location:C03: 22657087 : 22657863
Gene CDSs(3): 1-196 | 444-630 | 714-777 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50217BZIP 78 141 11.530IPR004827Basic-leucine zipper (bZIP) transcription factor
HMMPantherPTHR13301X-BOX TRANSCRIPTION 1 148 6.3e-57Not foundNot found
HMMPantherPTHR13301:SF13TRANSCRIPTION FACTOR 1 148 6.3e-57Not foundNot found
PatternScanPS00036BZIP_BASIC 83 98 NAIPR004827Basic-leucine zipper (bZIP) transcription factor
HMMSmartSM00338no description 75 140 1.5e-12IPR004827Basic-leucine zipper (bZIP) transcription factor
HMMPfamPF00170bZIP_1 76 139 1.6e-10IPR011616bZIP transcription factor, bZIP-1
Gene3DG3DSA:1.20.5.170no description 80 141 1.1e-06Not foundNot found
Segsegseg 111 122 NANot foundNot found
Segsegseg 10 15 NANot foundNot found
Coilcoilcoiled-coil 96 138 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
GO:0043565 Molecular Function sequence-specific DNA binding
GO:0046983 Molecular Function protein dimerization activity
Swiss-Prot
Best HitE_value Description
Q8W1918e-67HYH_ARATH Transcription factor HY5-like OS=Arabidopsis thaliana GN=HYH PE=1 SV=1
TrEMBL
Best HitE_value Description
Q682B68e-57Q682B6_ARATH BZip transcription factor AtbZip64 OS=Arabidopsis thaliana GN=At3g17609 PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
xtr:7340763e-09K09045ATF7, ATFAactivating transcription factor 7
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL14093(5 genes,5 taxa):Arabidopsis thalianaAT3G17609.2
ORTHOMCL14093(5 genes,5 taxa):Brassica oleraceaBol022925
ORTHOMCL14093(5 genes,5 taxa):Brassica rapaBra001671
ORTHOMCL14093(5 genes,5 taxa):Vitis viniferaGSVIVT01017714001
ORTHOMCL14093(5 genes,5 taxa):Populus trichocarpaPOPTR_0010s00680.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:21661066..23820630 (+)A.thalianaChr3:5305926..6609295 (+)104
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:22167356..23194911 (+)B.rapaA05:4427742..5728726 (+)63
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
FAT3G1760960239296024693Chr3Subgenome_II468
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


logo