Basic Information
Gene Model:Bol022909
Gene Family:Transcription Factor Families
Chromosome:C03
Scaffold:Scaffold000103
Sequence:
 | 
Gene Structure
Nucleotide Length:1265 bp
Transcript Length:804 bp
Protein Length:267 aa
Strand:-
Location:C03: 22836725 : 22837989
Gene CDSs(4): 1-93 | 308-641 | 771-895 | 1014-1265 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:2.40.330.10no description 16 113 2.3e-10Not foundNot found
HMMPfamPF02362B3 15 113 1e-10IPR003340Transcriptional factor B3
Segsegseg 11 21 NANot foundNot found
ProfileScanPS50863B3 230 267 7.204IPR003340Transcriptional factor B3
ProfileScanPS50863B3 17 111 10.983IPR003340Transcriptional factor B3
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q680D91e-80Y5475_ARATH B3 domain-containing protein At5g25475 OS=Arabidopsis thaliana GN=At5g25475 PE=2 SV=1
TrEMBL
Best HitE_value Description
A5AN701e-07A5AN70_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027623 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL14371(5 genes,3 taxa):Arabidopsis thalianaAT5G25470.1
ORTHOMCL14371(5 genes,3 taxa):Arabidopsis thalianaAT5G25475.2
ORTHOMCL14371(5 genes,3 taxa):Brassica oleraceaBol022347
ORTHOMCL14371(5 genes,3 taxa):Brassica oleraceaBol022909
ORTHOMCL14371(5 genes,3 taxa):Brassica rapaBra009842
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:21661066..23820630 (+)A.thalianaChr3:5305926..6609295 (+)104
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:22167356..23194911 (+)B.rapaA05:4427742..5728726 (+)63
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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