Basic Information
Gene Model:Bol022807
Gene Family:Not classificated
Chromosome:C02
Scaffold:Scaffold000104
Sequence:
 | 
Gene Structure
Nucleotide Length:3133 bp
Transcript Length:1758 bp
Protein Length:585 aa
Strand:-
Location:C02: 31541049 : 31544181
Gene CDSs(4): 1-115 | 212-429 | 934-1499 | 2275-3133 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR11654OLIGOPEPTIDE TRANSPO 1 585 0Not foundNot found
HMMPantherPTHR11654:SF37OLIGOPEPTIDE TRANSPO 1 585 0Not foundNot found
superfamilySSF103473MFS general substrat 1 578 1.1e-20IPR016196Major facilitator superfamily, general substrate transporter
Segsegseg 414 427 NANot foundNot found
HMMPfamPF00854PTR2 99 501 4.8e-114IPR000109Oligopeptide transporter
Gene Ontology
GO TermGO TypeDescription
GO:0005215 Molecular Function transporter activity
GO:0006857 Biological Process oligopeptide transport
GO:0016020 Cellular Component membrane
Swiss-Prot
Best HitE_value Description
Q9FNL70.0PTR3A_ARATH Peptide transporter PTR3-A OS=Arabidopsis thaliana GN=PTR3-A PE=2 SV=1
TrEMBL
Best HitE_value Description
B9HSR80.0B9HSR8_POPTR Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_565798 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
zma:1002802821e-146K14638
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL272(36 genes,8 taxa):Arabidopsis thalianaAT2G40460.1
ORTHOMCL272(36 genes,8 taxa):Arabidopsis thalianaAT5G46040.1
ORTHOMCL272(36 genes,8 taxa):Arabidopsis thalianaAT5G46050.1
ORTHOMCL272(36 genes,8 taxa):Brassica oleraceaBol005102
ORTHOMCL272(36 genes,8 taxa):Brassica oleraceaBol006869
ORTHOMCL272(36 genes,8 taxa):Brassica oleraceaBol020610
ORTHOMCL272(36 genes,8 taxa):Brassica oleraceaBol022807
ORTHOMCL272(36 genes,8 taxa):Brassica oleraceaBol032092
ORTHOMCL272(36 genes,8 taxa):Brassica oleraceaBol032093
ORTHOMCL272(36 genes,8 taxa):Brassica rapaBra000187
ORTHOMCL272(36 genes,8 taxa):Brassica rapaBra004571
ORTHOMCL272(36 genes,8 taxa):Brassica rapaBra016993
ORTHOMCL272(36 genes,8 taxa):Brassica rapaBra017582
ORTHOMCL272(36 genes,8 taxa):Brassica rapaBra017583
ORTHOMCL272(36 genes,8 taxa):Brassica rapaBra017585
ORTHOMCL272(36 genes,8 taxa):Brassica rapaBra022012
ORTHOMCL272(36 genes,8 taxa):Brassica rapaBra022013
ORTHOMCL272(36 genes,8 taxa):Vitis viniferaGSVIVT01027876001
ORTHOMCL272(36 genes,8 taxa):Vitis viniferaGSVIVT01028391001
ORTHOMCL272(36 genes,8 taxa):Vitis viniferaGSVIVT01028392001
ORTHOMCL272(36 genes,8 taxa):Vitis viniferaGSVIVT01032716001
ORTHOMCL272(36 genes,8 taxa):Oryza sativaOs03t0138700-01
ORTHOMCL272(36 genes,8 taxa):Oryza sativaOs10t0469900-01
ORTHOMCL272(36 genes,8 taxa):Oryza sativaOs10t0469900-02
ORTHOMCL272(36 genes,8 taxa):Oryza sativaOs10t0470700-01
ORTHOMCL272(36 genes,8 taxa):Populus trichocarpaPOPTR_0002s26040.1
ORTHOMCL272(36 genes,8 taxa):Populus trichocarpaPOPTR_0002s26060.1
ORTHOMCL272(36 genes,8 taxa):Populus trichocarpaPOPTR_0008s17000.1
ORTHOMCL272(36 genes,8 taxa):Populus trichocarpaPOPTR_0010s07870.1
ORTHOMCL272(36 genes,8 taxa):Populus trichocarpaPOPTR_0019s08340.1
ORTHOMCL272(36 genes,8 taxa):Sorghum bicolorSb01g019630.1
ORTHOMCL272(36 genes,8 taxa):Sorghum bicolorSb01g019640.1
ORTHOMCL272(36 genes,8 taxa):Sorghum bicolorSb01g047690.1
ORTHOMCL272(36 genes,8 taxa):Carica papayaevm.TU.supercontig_165.44
ORTHOMCL272(36 genes,8 taxa):Carica papayaevm.TU.supercontig_19.96
ORTHOMCL272(36 genes,8 taxa):Carica papayaevm.TU.supercontig_44.19
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:30141739..32074768 (+)A.thalianaChr5:18163132..18910838 (+)57
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:30451587..32001405 (+)B.rapaA09:29727598..30509924 (-)14
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
VAT5G460401867139718673551Chr5Subgenome_I55
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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