Basic Information
Gene Model:Bol022718
Gene Family:U-box Gene Family
Chromosome:C07
Scaffold:Scaffold000105
Sequence:
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Gene Structure
Nucleotide Length:10020 bp
Transcript Length:2010 bp
Protein Length:669 aa
Strand:+
Location:C07: 7979725 : 7989744
Gene CDSs(10): 1-213 | 301-576 | 1138-1566 | 1652-1753 | 1838-2106 | 2352-2465 | 2575-2696 | 2774-2895 | 2972-3099 | 9786-10020 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
PatternScanPS00107PROTEIN_KINASE_ATP 470 491 NAIPR017441Protein kinase, ATP binding site
Segsegseg 81 98 NANot foundNot found
HMMPantherPTHR23258SERINE-THREONINE PRO 280 654 9.8e-123Not foundNot found
HMMPantherPTHR23258:SF447RECEPTOR-LIKE PROTEI 280 654 9.8e-123Not foundNot found
Gene3DG3DSA:3.30.40.10no description 585 661 9.7e-22Not foundNot found
Gene3DG3DSA:3.30.200.20no description 445 507 9.5e-07Not foundNot found
Gene3DG3DSA:3.40.50.620no description 41 175 0.00032IPR014729Rossmann-like alpha/beta/alpha sandwich fold
HMMSmartSM00504no description 592 654 4.4e-28IPR003613U box domain
HMMPfamPF04564U-box 589 661 6.8e-22IPR003613U box domain
HMMPfamPF00069Pkinase 464 503 8.7e-08IPR017442Serine/threonine-protein kinase-like domain
superfamilySSF56112Protein kinase-like 449 507 3e-11IPR011009Protein kinase-like domain
superfamilySSF52402Adenine nucleotide a 41 186 3.1e-07Not foundNot found
superfamilySSF57850RING/U-box 593 647 1.3e-15Not foundNot found
Coilcoilcoiled-coil 323 362 NANot foundNot found
Coilcoilcoiled-coil 397 418 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0000151 Cellular Component ubiquitin ligase complex
GO:0004672 Molecular Function protein kinase activity
GO:0004842 Molecular Function ubiquitin-protein ligase activity
GO:0005524 Molecular Function ATP binding
GO:0006468 Biological Process protein phosphorylation
GO:0016567 Biological Process protein ubiquitination
Swiss-Prot
Best HitE_value Description
Q8S8S70.0PUB34_ARATH U-box domain-containing protein 34 OS=Arabidopsis thaliana GN=PUB34 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q3E8A31e-114Q3E8A3_ARATH Putative uncharacterized protein At5g57035.1 OS=Arabidopsis thaliana GN=At5g57035 PE=4 SV=2
KEGG
Best HitE_valueKOEC or Symbol Description
sbi:SORBI_07g0013402e-06K09561STUB1, CHIPSTIP1 homology and U-box containing protein 1
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1505(17 genes,8 taxa):Arabidopsis thalianaAT2G19410.1
ORTHOMCL1505(17 genes,8 taxa):Arabidopsis thalianaAT5G57035.1
ORTHOMCL1505(17 genes,8 taxa):Brassica oleraceaBol003293
ORTHOMCL1505(17 genes,8 taxa):Brassica oleraceaBol022718
ORTHOMCL1505(17 genes,8 taxa):Brassica oleraceaBol026052
ORTHOMCL1505(17 genes,8 taxa):Brassica oleraceaBol037990
ORTHOMCL1505(17 genes,8 taxa):Brassica rapaBra002768
ORTHOMCL1505(17 genes,8 taxa):Brassica rapaBra006836
ORTHOMCL1505(17 genes,8 taxa):Brassica rapaBra012181
ORTHOMCL1505(17 genes,8 taxa):Brassica rapaBra038999
ORTHOMCL1505(17 genes,8 taxa):Vitis viniferaGSVIVT01015162001
ORTHOMCL1505(17 genes,8 taxa):Oryza sativaOs02t0218600-00
ORTHOMCL1505(17 genes,8 taxa):Oryza sativaOs06t0574200-01
ORTHOMCL1505(17 genes,8 taxa):Populus trichocarpaPOPTR_0006s14900.1
ORTHOMCL1505(17 genes,8 taxa):Sorghum bicolorSb04g007630.1
ORTHOMCL1505(17 genes,8 taxa):Sorghum bicolorSb10g022690.1
ORTHOMCL1505(17 genes,8 taxa):Carica papayaevm.TU.supercontig_28.112
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:7027182..10194355 (+)A.thalianaChr4:14352037..14911307 (+)29
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:7226852..8055363 (+)B.rapaA09:4570337..4714377 (-)12
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
HAT2G1941084049018409012Chr2Subgenome_III(LF)95
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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