Basic Information
Gene Model:Bol022689
Gene Family:Not classificated
Chromosome:C07
Scaffold:Scaffold000105
Sequence:
 | 
Gene Structure
Nucleotide Length:3408 bp
Transcript Length:2448 bp
Protein Length:815 aa
Strand:+
Location:C07: 8508451 : 8511858
Gene CDSs(10): 1-410 | 477-758 | 823-1090 | 1164-1489 | 1566-1851 | 2197-2269 | 2344-2439 | 2541-2935 | 3006-3150 | 3242-3408 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:3.40.50.200no description 147 672 3.6e-65IPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
HMMPantherPTHR10795SUBTILISIN/KEXIN-REL 42 809 1.1e-273IPR015500Peptidase S8, subtilisin-related
HMMPantherPTHR10795:SF17SUBTILISIN-LIKE PROT 42 809 1.1e-273Not foundNot found
superfamilySSF54897Protease propeptides 19 126 3.3e-07IPR009020Proteinase inhibitor, propeptide
superfamilySSF52743Subtilisin-like 124 676 1.7e-72IPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
HMMPfamPF02225PA 389 502 1.2e-16IPR003137Protease-associated PA
HMMPfamPF06280DUF1034 697 809 1.5e-36IPR010435Peptidase S8A, DUF1034 C-terminal
HMMPfamPF05922Inhibitor_I9 20 126 2.8e-14IPR010259Proteinase inhibitor I9, subtilisin propeptide
HMMPfamPF00082Peptidase_S8 147 663 2.5e-30IPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
Segsegseg 283 296 NANot foundNot found
Segsegseg 206 218 NANot foundNot found
PatternScanPS00138SUBTILASE_SER 594 604 NAIPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
PatternScanPS00136SUBTILASE_ASP 156 167 NAIPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
Gene Ontology
GO TermGO TypeDescription
GO:0004252 Molecular Function serine-type endopeptidase activity
GO:0005618 Cellular Component cell wall
GO:0006508 Biological Process proteolysis
GO:0016020 Cellular Component membrane
GO:0042802 Molecular Function identical protein binding
GO:0043086 Biological Process negative regulation of catalytic activity
Swiss-Prot
Best HitE_value Description
O653517e-99SUBL_ARATH Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1
TrEMBL
Best HitE_value Description
B2Y4N70.0B2Y4N7_ARAHA Putative subtilase family protein OS=Arabidopsis halleri subsp. halleri GN=17L07.9 PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL322(33 genes,8 taxa):Arabidopsis thalianaAT1G30600.1
ORTHOMCL322(33 genes,8 taxa):Arabidopsis thalianaAT2G19170.1
ORTHOMCL322(33 genes,8 taxa):Arabidopsis thalianaAT4G20430.1
ORTHOMCL322(33 genes,8 taxa):Arabidopsis thalianaAT4G30020.1
ORTHOMCL322(33 genes,8 taxa):Arabidopsis thalianaAT5G44530.1
ORTHOMCL322(33 genes,8 taxa):Brassica oleraceaBol006370
ORTHOMCL322(33 genes,8 taxa):Brassica oleraceaBol014603
ORTHOMCL322(33 genes,8 taxa):Brassica oleraceaBol020964
ORTHOMCL322(33 genes,8 taxa):Brassica oleraceaBol022689
ORTHOMCL322(33 genes,8 taxa):Brassica oleraceaBol028350
ORTHOMCL322(33 genes,8 taxa):Brassica oleraceaBol029805
ORTHOMCL322(33 genes,8 taxa):Brassica oleraceaBol033631
ORTHOMCL322(33 genes,8 taxa):Brassica rapaBra011160
ORTHOMCL322(33 genes,8 taxa):Brassica rapaBra013464
ORTHOMCL322(33 genes,8 taxa):Brassica rapaBra024112
ORTHOMCL322(33 genes,8 taxa):Brassica rapaBra032407
ORTHOMCL322(33 genes,8 taxa):Brassica rapaBra033749
ORTHOMCL322(33 genes,8 taxa):Brassica rapaBra036728
ORTHOMCL322(33 genes,8 taxa):Brassica rapaBra038844
ORTHOMCL322(33 genes,8 taxa):Vitis viniferaGSVIVT01004808001
ORTHOMCL322(33 genes,8 taxa):Vitis viniferaGSVIVT01010871001
ORTHOMCL322(33 genes,8 taxa):Vitis viniferaGSVIVT01037948001
ORTHOMCL322(33 genes,8 taxa):Oryza sativaOs01t0769200-01
ORTHOMCL322(33 genes,8 taxa):Oryza sativaOs06t0700000-01
ORTHOMCL322(33 genes,8 taxa):Populus trichocarpaPOPTR_0001s15120.1
ORTHOMCL322(33 genes,8 taxa):Populus trichocarpaPOPTR_0001s43080.1
ORTHOMCL322(33 genes,8 taxa):Populus trichocarpaPOPTR_0006s07580.1
ORTHOMCL322(33 genes,8 taxa):Populus trichocarpaPOPTR_0011s15890.1
ORTHOMCL322(33 genes,8 taxa):Populus trichocarpaPOPTR_0018s14020.1
ORTHOMCL322(33 genes,8 taxa):Populus trichocarpaPOPTR_0018s14020.2
ORTHOMCL322(33 genes,8 taxa):Sorghum bicolorSb03g035770.1
ORTHOMCL322(33 genes,8 taxa):Sorghum bicolorSb10g028870.1
ORTHOMCL322(33 genes,8 taxa):Carica papayaevm.TU.supercontig_95.18
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:7027182..10194355 (+)A.thalianaChr4:14352037..14911307 (+)29
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:8443998..10100569 (+)B.rapaA09:31926831..32367237 (-)13
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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