Basic Information
Gene Model:Bol022680
Gene Family:Transcription Factor Families
Chromosome:Cun
Scaffold:Scaffold000106
Sequence:
 | 
Gene Structure
Nucleotide Length:3312 bp
Transcript Length:2469 bp
Protein Length:822 aa
Strand:+
Location:Scaffold000106: 1430923 : 1434234
Gene CDSs(6): 1-190 | 348-916 | 1011-1058 | 1415-2321 | 2485-2772 | 2846-3312 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMSmartSM00666no description 718 804 2e-23IPR000270Octicosapeptide/Phox/Bem1p
Segsegseg 810 817 NANot foundNot found
Segsegseg 624 643 NANot foundNot found
Segsegseg 530 549 NANot foundNot found
Segsegseg 18 35 NANot foundNot found
Segsegseg 59 72 NANot foundNot found
superfamilySSF54277CAD & PB1 domains 713 804 2.7e-21Not foundNot found
HMMPfamPF00564PB1 718 804 3.2e-23IPR000270Octicosapeptide/Phox/Bem1p
HMMPfamPF02042RWP-RK 546 597 3.9e-30IPR003035Plant regulator RWP-RK
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description

Note: best hit of this gene was not detected in Swiss-Prot database.

TrEMBL
Best HitE_value Description
Q8H1050.0Q8H105_ARATH Putative uncharacterized protein At1g64530 OS=Arabidopsis thaliana GN=At1g64530 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL2913(13 genes,7 taxa):Arabidopsis thalianaAT1G64530.1
ORTHOMCL2913(13 genes,7 taxa):Arabidopsis thalianaAT4G24020.1
ORTHOMCL2913(13 genes,7 taxa):Brassica oleraceaBol009587
ORTHOMCL2913(13 genes,7 taxa):Brassica oleraceaBol022680
ORTHOMCL2913(13 genes,7 taxa):Brassica oleraceaBol042145
ORTHOMCL2913(13 genes,7 taxa):Brassica rapaBra013754
ORTHOMCL2913(13 genes,7 taxa):Brassica rapaBra019251
ORTHOMCL2913(13 genes,7 taxa):Brassica rapaBra040914
ORTHOMCL2913(13 genes,7 taxa):Vitis viniferaGSVIVT01019600001
ORTHOMCL2913(13 genes,7 taxa):Oryza sativaOs01t0236700-01
ORTHOMCL2913(13 genes,7 taxa):Populus trichocarpaPOPTR_0001s10970.1
ORTHOMCL2913(13 genes,7 taxa):Populus trichocarpaPOPTR_0003s14300.1
ORTHOMCL2913(13 genes,7 taxa):Sorghum bicolorSb03g000490.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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