Basic Information
Gene Model:Bol022588
Gene Family:Transcription Factor Families
Chromosome:Cun
Scaffold:Scaffold000106
Sequence:
 | 
Gene Structure
Nucleotide Length:747 bp
Transcript Length:747 bp
Protein Length:248 aa
Strand:+
Location:Scaffold000106: 253281 : 254027
Gene CDSs(1): 1-747 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMSmartSM00380no description 83 145 6.5e-30IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Gene3DG3DSA:3.30.730.10no description 82 142 1.3e-19IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
HMMPfamPF00847AP2 82 132 7.7e-17IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Segsegseg 153 198 NANot foundNot found
Segsegseg 47 60 NANot foundNot found
Segsegseg 118 128 NANot foundNot found
ProfileScanPS51032AP2_ERF 83 139 19.968IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
superfamilySSF54171DNA-binding domain 82 142 4.8e-20IPR016177DNA-binding, integrase-type
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q9CAN98e-69ERF26_ARATH Ethylene-responsive transcription factor ERF026 OS=Arabidopsis thaliana GN=ERF026 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9GW613e-45B9GW61_POPTR AP2/ERF domain-containing transcription factor OS=Populus trichocarpa GN=DREB64 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT4G254703e-31K09286EREBPEREBP-like factor
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL16191(4 genes,2 taxa):Brassica oleraceaBol022588
ORTHOMCL16191(4 genes,2 taxa):Brassica rapaBra027614
ORTHOMCL16191(4 genes,2 taxa):Brassica rapaBra027615
ORTHOMCL16191(4 genes,2 taxa):Brassica rapaBra027616
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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