Basic Information
Gene Model:Bol022553
Gene Family:Not classificated
Chromosome:C05
Scaffold:Scaffold000107
Sequence:
 | 
Gene Structure
Nucleotide Length:2088 bp
Transcript Length:1539 bp
Protein Length:512 aa
Strand:-
Location:C05: 10966056 : 10968143
Gene CDSs(4): 1-744 | 1141-1494 | 1569-1674 | 1754-2088 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF81606Protein serine/threo 167 507 2.2e-71IPR001932Protein phosphatase 2C-related
PatternScanPS01032PP2C 237 245 NAIPR000222Protein phosphatase 2C, manganese/magnesium aspartate binding site
HMMPfamPF00481PP2C 187 495 7.4e-65IPR014045Protein phosphatase 2C, N-terminal
HMMPantherPTHR13832PROTEIN PHOSPHATASE 167 512 1.8e-140IPR015655Protein phosphatase 2C
HMMPantherPTHR13832:SF87PROTEIN PHOSPHATASE 167 512 1.8e-140Not foundNot found
Segsegseg 85 96 NANot foundNot found
Segsegseg 260 275 NANot foundNot found
HMMSmartSM00332no description 178 500 1.5e-96IPR001932Protein phosphatase 2C-related
Gene3DG3DSA:3.60.40.10no description 189 506 1.5e-68IPR001932Protein phosphatase 2C-related
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
GO:0004722 Molecular Function protein serine/threonine phosphatase activity
GO:0006470 Biological Process protein dephosphorylation
GO:0008287 Cellular Component protein serine/threonine phosphatase complex
Swiss-Prot
Best HitE_value Description
Q9LNP90.0P2C07_ARATH Protein phosphatase 2C 7 OS=Arabidopsis thaliana GN=HAB2 PE=2 SV=2
TrEMBL
Best HitE_value Description
B9S5U91e-162B9S5U9_RICCO Protein phosphatase 2c, putative OS=Ricinus communis GN=RCOM_0654770 PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G175500.0K14497PP2Cprotein phosphatase 2C
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL2813(13 genes,8 taxa):Arabidopsis thalianaAT1G17550.1
ORTHOMCL2813(13 genes,8 taxa):Arabidopsis thalianaAT1G72770.1
ORTHOMCL2813(13 genes,8 taxa):Brassica oleraceaBol013257
ORTHOMCL2813(13 genes,8 taxa):Brassica oleraceaBol022553
ORTHOMCL2813(13 genes,8 taxa):Brassica oleraceaBol026318
ORTHOMCL2813(13 genes,8 taxa):Brassica rapaBra016034
ORTHOMCL2813(13 genes,8 taxa):Brassica rapaBra016595
ORTHOMCL2813(13 genes,8 taxa):Brassica rapaBra025964
ORTHOMCL2813(13 genes,8 taxa):Vitis viniferaGSVIVT01016816001
ORTHOMCL2813(13 genes,8 taxa):Oryza sativaOs01t0583100-01
ORTHOMCL2813(13 genes,8 taxa):Populus trichocarpaPOPTR_0003s04120.1
ORTHOMCL2813(13 genes,8 taxa):Sorghum bicolorSb03g026070.1
ORTHOMCL2813(13 genes,8 taxa):Carica papayaevm.TU.supercontig_25.87
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:10804885..12301290 (-)A.thalianaChr1:10310245..10819362 (+)57
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:10804885..12301290 (+)B.rapaA09:33863028..34697836 (-)58
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
BAT1G1755060343626037289Chr1Subgenome_III(LF)112
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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