Basic Information
Gene Model:Bol022551
Gene Family:Transcription Factor Families
Chromosome:C05
Scaffold:Scaffold000107
Sequence:
 | 
Gene Structure
Nucleotide Length:2135 bp
Transcript Length:870 bp
Protein Length:289 aa
Strand:+
Location:C05: 10979336 : 10981470
Gene CDSs(6): 1-32 | 140-425 | 571-651 | 764-848 | 920-1155 | 1986-2135 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00538Linker_histone 127 193 3.9e-06IPR005818Histone H1/H5
HMMPfamPF00249Myb_DNA-binding 5 57 3.4e-07IPR014778Myb, DNA-binding
superfamilySSF46785"Winged helix" DNA-b 122 206 1.4e-13Not foundNot found
superfamilySSF46689Homeodomain-like 1 68 1.2e-08IPR009057Homeodomain-like
HMMSmartSM00717no description 4 59 3e-08IPR001005SANT, DNA-binding
HMMSmartSM00526no description 124 188 1.4e-14IPR005818Histone H1/H5
Gene3DG3DSA:1.10.10.10no description 121 204 3.1e-05IPR011991Winged helix repressor DNA-binding
Gene3DG3DSA:1.10.10.60no description 1 68 6.5e-13IPR012287Homeodomain-related
HMMPantherPTHR11467HISTONE H1/H5 128 185 7.2e-07Not foundNot found
Segsegseg 82 103 NANot foundNot found
ProfileScanPS51294HTH_MYB 1 61 15.218IPR017930Myb-type HTH DNA-binding domain
Gene Ontology
GO TermGO TypeDescription
GO:0000786 Cellular Component nucleosome
GO:0003677 Molecular Function DNA binding
GO:0005634 Cellular Component nucleus
GO:0006334 Biological Process nucleosome assembly
GO:0045449 Biological Process regulation of transcription
Swiss-Prot
Best HitE_value Description

Note: best hit of this gene was not detected in Swiss-Prot database.

TrEMBL
Best HitE_value Description
Q8GWZ52e-85Q8GWZ5_ARATH Putative myb-related DNA-binding protein OS=Arabidopsis thaliana GN=At1g17520/F1L3_25 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G175206e-87K09422MYBPmyb proto-oncogene protein, plant
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL4575(11 genes,8 taxa):Arabidopsis thalianaAT1G72740.1
ORTHOMCL4575(11 genes,8 taxa):Brassica oleraceaBol022551
ORTHOMCL4575(11 genes,8 taxa):Brassica oleraceaBol026320
ORTHOMCL4575(11 genes,8 taxa):Brassica rapaBra025967
ORTHOMCL4575(11 genes,8 taxa):Vitis viniferaGSVIVT01015170001
ORTHOMCL4575(11 genes,8 taxa):Oryza sativaOs01t0708000-00
ORTHOMCL4575(11 genes,8 taxa):Populus trichocarpaPOPTR_0006s14940.1
ORTHOMCL4575(11 genes,8 taxa):Populus trichocarpaPOPTR_0018s07040.1
ORTHOMCL4575(11 genes,8 taxa):Sorghum bicolorSb03g032530.1
ORTHOMCL4575(11 genes,8 taxa):Carica papayaevm.TU.supercontig_106.29
ORTHOMCL4575(11 genes,8 taxa):Carica papayaevm.TU.supercontig_25.83
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:10804885..12301290 (-)A.thalianaChr1:10310245..10819362 (+)57
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:10804885..12301290 (+)B.rapaA09:33863028..34697836 (-)58
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
BAT1G1752060246366027385Chr1Subgenome_III(LF)112
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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