Basic Information
Gene Model:Bol022542
Gene Family:Transcription Factor Families
Chromosome:C05
Scaffold:Scaffold000107
Sequence:
 | 
Gene Structure
Nucleotide Length:4567 bp
Transcript Length:2751 bp
Protein Length:916 aa
Strand:+
Location:C05: 11180410 : 11184976
Gene CDSs(13): 1-229 | 309-499 | 576-1696 | 1787-2088 | 2170-2292 | 2375-2539 | 2621-2711 | 2790-2874 | 2958-3113 | 3197-3253 | 3332-3430 | 3510-3628 | 4555-4567 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:2.40.330.10no description 106 235 3.9e-42Not foundNot found
ProfileScanPS50863B3 119 221 12.464IPR003340Transcriptional factor B3
ProfileScanPS50962IAA_ARF 774 856 24.733IPR011525Aux/IAA-ARF-dimerisation
HMMPfamPF06507Auxin_resp 245 328 7.6e-55IPR010525Auxin response factor
HMMPfamPF02362B3 118 223 7.2e-33IPR003340Transcriptional factor B3
Segsegseg 532 544 NANot foundNot found
Segsegseg 552 563 NANot foundNot found
Segsegseg 866 882 NANot foundNot found
Segsegseg 243 250 NANot foundNot found
Segsegseg 410 418 NANot foundNot found
Segsegseg 490 521 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0005634 Cellular Component nucleus
GO:0006355 Biological Process regulation of transcription, DNA-dependent
GO:0009725 Biological Process response to hormone stimulus
GO:0045449 Biological Process regulation of transcription
GO:0046983 Molecular Function protein dimerization activity
Swiss-Prot
Best HitE_value Description
Q9ZTX80.0ARFF_ARATH Auxin response factor 6 OS=Arabidopsis thaliana GN=ARF6 PE=2 SV=2
TrEMBL
Best HitE_value Description
A7Q1860.0A7Q186_VITVI Chromosome chr10 scaffold_43, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00028351001 PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT5G207301e-140K14486K14486, ARFauxin response factor
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL398(30 genes,8 taxa):Arabidopsis thalianaAT1G30330.2
ORTHOMCL398(30 genes,8 taxa):Arabidopsis thalianaAT5G37020.1
ORTHOMCL398(30 genes,8 taxa):Brassica oleraceaBol012563
ORTHOMCL398(30 genes,8 taxa):Brassica oleraceaBol016113
ORTHOMCL398(30 genes,8 taxa):Brassica oleraceaBol022542
ORTHOMCL398(30 genes,8 taxa):Brassica oleraceaBol040239
ORTHOMCL398(30 genes,8 taxa):Brassica rapaBra004125
ORTHOMCL398(30 genes,8 taxa):Brassica rapaBra010776
ORTHOMCL398(30 genes,8 taxa):Brassica rapaBra028110
ORTHOMCL398(30 genes,8 taxa):Vitis viniferaGSVIVT01020805001
ORTHOMCL398(30 genes,8 taxa):Vitis viniferaGSVIVT01021553001
ORTHOMCL398(30 genes,8 taxa):Vitis viniferaGSVIVT01035204001
ORTHOMCL398(30 genes,8 taxa):Vitis viniferaGSVIVT01035205001
ORTHOMCL398(30 genes,8 taxa):Oryza sativaOs02t0164900-01
ORTHOMCL398(30 genes,8 taxa):Oryza sativaOs02t0164900-02
ORTHOMCL398(30 genes,8 taxa):Oryza sativaOs04t0671900-01
ORTHOMCL398(30 genes,8 taxa):Oryza sativaOs04t0671900-02
ORTHOMCL398(30 genes,8 taxa):Oryza sativaOs04t0671900-03
ORTHOMCL398(30 genes,8 taxa):Oryza sativaOs06t0677800-01
ORTHOMCL398(30 genes,8 taxa):Oryza sativaOs12t0613700-01
ORTHOMCL398(30 genes,8 taxa):Populus trichocarpaPOPTR_0001s36900.1
ORTHOMCL398(30 genes,8 taxa):Populus trichocarpaPOPTR_0002s05590.1
ORTHOMCL398(30 genes,8 taxa):Populus trichocarpaPOPTR_0004s07640.1
ORTHOMCL398(30 genes,8 taxa):Populus trichocarpaPOPTR_0005s22920.1
ORTHOMCL398(30 genes,8 taxa):Populus trichocarpaPOPTR_0011s09450.1
ORTHOMCL398(30 genes,8 taxa):Populus trichocarpaPOPTR_0017s01870.1
ORTHOMCL398(30 genes,8 taxa):Sorghum bicolorSb04g004430.1
ORTHOMCL398(30 genes,8 taxa):Sorghum bicolorSb06g032500.1
ORTHOMCL398(30 genes,8 taxa):Sorghum bicolorSb10g027220.1
ORTHOMCL398(30 genes,8 taxa):Carica papayaevm.TU.supercontig_17.47
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:10804885..12301290 (-)A.thalianaChr1:10310245..10819362 (+)57
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:10804885..12301290 (+)B.rapaA09:33863028..34697836 (-)58
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
BAT1G303301068582210690036Chr1Subgenome_III(LF)112
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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