Basic Information
Gene Model:Bol022421
Gene Family:Not classificated
Chromosome:C07
Scaffold:Scaffold000108
Sequence:
 | 
Gene Structure
Nucleotide Length:2412 bp
Transcript Length:1674 bp
Protein Length:557 aa
Strand:+
Location:C07: 36118575 : 36120986
Gene CDSs(7): 1-238 | 451-612 | 747-877 | 1021-1176 | 1269-1513 | 1598-2228 | 2302-2412 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:3.40.50.2300no description 55 176 5e-25Not foundNot found
superfamilySSF52172CheY-like 53 181 4.9e-29IPR011006CheY-like
ProfileScanPS51017CCT 502 544 15.517IPR010402CCT domain
ProfileScanPS50110RESPONSE_REGULATORY 55 173 28.272IPR001789Signal transduction response regulator, receiver region
Segsegseg 405 422 NANot foundNot found
Segsegseg 221 233 NANot foundNot found
Segsegseg 363 377 NANot foundNot found
Segsegseg 3 15 NANot foundNot found
HMMSmartSM00448no description 54 169 2.5e-25IPR001789Signal transduction response regulator, receiver region
HMMPantherPTHR23283SENSOR HISTIDINE KIN 55 178 7.2e-17Not foundNot found
HMMPantherPTHR23283:SF47SENSORY TRANSDUCTION 55 178 7.2e-17Not foundNot found
HMMPfamPF06203CCT 502 546 1.3e-22IPR010402CCT domain
HMMPfamPF00072Response_reg 56 170 2.9e-24IPR001789Signal transduction response regulator, receiver region
Gene Ontology
GO TermGO TypeDescription
GO:0000156 Molecular Function two-component response regulator activity
GO:0000160 Biological Process two-component signal transduction system (phosphorelay)
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q6LA420.0APRR5_ARATH Two-component response regulator-like APRR5 OS=Arabidopsis thaliana GN=APRR5 PE=1 SV=2
TrEMBL
Best HitE_value Description
B9I2964e-85B9I296_POPTR Pseudo response regulator OS=Populus trichocarpa GN=POPTRDRAFT_806314 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT5G244700.0K12130APRR5pseudo-response regulator 5
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL2679(14 genes,7 taxa):Arabidopsis thalianaAT5G24470.1
ORTHOMCL2679(14 genes,7 taxa):Brassica oleraceaBol016452
ORTHOMCL2679(14 genes,7 taxa):Brassica oleraceaBol022421
ORTHOMCL2679(14 genes,7 taxa):Brassica oleraceaBol036197
ORTHOMCL2679(14 genes,7 taxa):Brassica rapaBra009768
ORTHOMCL2679(14 genes,7 taxa):Brassica rapaBra029407
ORTHOMCL2679(14 genes,7 taxa):Brassica rapaBra036517
ORTHOMCL2679(14 genes,7 taxa):Vitis viniferaGSVIVT01038647001
ORTHOMCL2679(14 genes,7 taxa):Oryza sativaOs09t0532400-01
ORTHOMCL2679(14 genes,7 taxa):Oryza sativaOs09t0532400-02
ORTHOMCL2679(14 genes,7 taxa):Populus trichocarpaPOPTR_0012s00600.1
ORTHOMCL2679(14 genes,7 taxa):Populus trichocarpaPOPTR_0012s00600.2
ORTHOMCL2679(14 genes,7 taxa):Populus trichocarpaPOPTR_0015s00440.1
ORTHOMCL2679(14 genes,7 taxa):Carica papayaevm.TU.supercontig_3.156
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:35067783..36982847 (-)A.thalianaChr5:7696135..9426417 (+)210
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:35067783..36145232 (+)B.rapaA09:7725142..8129994 (-)52
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
QAT5G2447083559518358873Chr5Subgenome_III(LF)206
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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