Basic Information
Gene Model:Bol022347
Gene Family:Transcription Factor Families
Chromosome:C07
Scaffold:Scaffold000108
Sequence:
 | 
Gene Structure
Nucleotide Length:1529 bp
Transcript Length:840 bp
Protein Length:279 aa
Strand:+
Location:C07: 35543193 : 35544721
Gene CDSs(4): 1-123 | 618-975 | 1066-1175 | 1281-1529 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
PatternScanPS00589PTS_HPR_SER 26 41 NAIPR002114Phosphotransferase system, HPr serine phosphorylation site
ProfileScanPS50863B3 43 121 10.207IPR003340Transcriptional factor B3
Gene3DG3DSA:2.40.330.10no description 43 123 3.9e-09Not foundNot found
Segsegseg 143 164 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0005351 Molecular Function sugar:hydrogen symporter activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
GO:0009401 Biological Process phosphoenolpyruvate-dependent sugar phosphotransferase system
Swiss-Prot
Best HitE_value Description
Q680D96e-77Y5475_ARATH B3 domain-containing protein At5g25475 OS=Arabidopsis thaliana GN=At5g25475 PE=2 SV=1
TrEMBL
Best HitE_value Description

Note: this gene was not detected its best hit in TrEMBL database.

KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL14371(5 genes,3 taxa):Arabidopsis thalianaAT5G25470.1
ORTHOMCL14371(5 genes,3 taxa):Arabidopsis thalianaAT5G25475.2
ORTHOMCL14371(5 genes,3 taxa):Brassica oleraceaBol022347
ORTHOMCL14371(5 genes,3 taxa):Brassica oleraceaBol022909
ORTHOMCL14371(5 genes,3 taxa):Brassica rapaBra009842
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:35465426..36046757 (-)A.thalianaChr5:3347421..3613361 (+)17
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:35322023..36046757 (+)B.rapaA10:1680634..2090817 (+)19
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
QAT5G2547088656518867685Chr5Subgenome_III(LF)206
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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