Basic Information
Gene Model:Bol022313
Gene Family:Not classificated
Chromosome:C07
Scaffold:Scaffold000108
Sequence:
 | 
Gene Structure
Nucleotide Length:2088 bp
Transcript Length:927 bp
Protein Length:308 aa
Strand:+
Location:C07: 35331962 : 35334049
Gene CDSs(5): 1-195 | 930-1205 | 1363-1390 | 1567-1790 | 1885-2088 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMSmartSM00332no description 34 294 5.8e-49IPR001932Protein phosphatase 2C-related
HMMPfamPF00481PP2C 43 281 1.7e-23IPR014045Protein phosphatase 2C, N-terminal
HMMPantherPTHR13832PROTEIN PHOSPHATASE 46 308 8.6e-90IPR015655Protein phosphatase 2C
HMMPantherPTHR13832:SF94PROTEIN PHOSPHATASE 46 308 8.6e-90Not foundNot found
Gene3DG3DSA:3.60.40.10no description 46 300 5.7e-48IPR001932Protein phosphatase 2C-related
Segsegseg 278 285 NANot foundNot found
Segsegseg 9 20 NANot foundNot found
Segsegseg 265 275 NANot foundNot found
superfamilySSF81606Protein serine/threo 23 301 1.5e-49IPR001932Protein phosphatase 2C-related
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
Swiss-Prot
Best HitE_value Description
Q9XGZ91e-135P2C72_ARATH Probable protein phosphatase 2C 72 OS=Arabidopsis thaliana GN=At5g26010 PE=2 SV=2
TrEMBL
Best HitE_value Description
B9INF63e-78B9INF6_POPTR Predicted protein (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_736797 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
tet:TTHERM_012434303e-30K01102E3.1.3.43, PDPpyruvate dehydrogenase phosphatase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL5293(11 genes,8 taxa):Arabidopsis thalianaAT5G26010.1
ORTHOMCL5293(11 genes,8 taxa):Brassica oleraceaBol022313
ORTHOMCL5293(11 genes,8 taxa):Brassica rapaBra009875
ORTHOMCL5293(11 genes,8 taxa):Brassica rapaBra034542
ORTHOMCL5293(11 genes,8 taxa):Vitis viniferaGSVIVT01035345001
ORTHOMCL5293(11 genes,8 taxa):Oryza sativaOs02t0224100-01
ORTHOMCL5293(11 genes,8 taxa):Oryza sativaOs02t0224100-02
ORTHOMCL5293(11 genes,8 taxa):Populus trichocarpaPOPTR_0006s24880.1
ORTHOMCL5293(11 genes,8 taxa):Populus trichocarpaPOPTR_0018s04620.1
ORTHOMCL5293(11 genes,8 taxa):Sorghum bicolorSb04g007930.1
ORTHOMCL5293(11 genes,8 taxa):Carica papayaevm.TU.supercontig_7.189
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:35067783..36982847 (-)A.thalianaChr5:7696135..9426417 (+)210
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:35322023..36046757 (+)B.rapaA10:1680634..2090817 (+)19
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
QAT5G2601090853939087372Chr5Subgenome_III(LF)206
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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