Basic Information
Gene Model:Bol022302
Gene Family:Not classificated
Chromosome:C07
Scaffold:Scaffold000108
Sequence:
 | 
Gene Structure
Nucleotide Length:1585 bp
Transcript Length:786 bp
Protein Length:261 aa
Strand:+
Location:C07: 35280612 : 35282196
Gene CDSs(5): 1-112 | 211-243 | 783-1011 | 1100-1232 | 1307-1585 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50016ZF_PHD_2 205 257 9.374IPR019787Zinc finger, PHD-finger
HMMSmartSM00249no description 207 255 4.5e-09IPR001965Zinc finger, PHD-type
Gene3DG3DSA:3.30.40.10no description 200 261 5.7e-16Not foundNot found
HMMPfamPF00628PHD 207 257 3.5e-16IPR019787Zinc finger, PHD-finger
HMMPantherPTHR23123PHD/F-BOX CONTAINING 211 261 1.8e-11Not foundNot found
superfamilySSF57903FYVE/PHD zinc finger 200 261 2e-11IPR011011Zinc finger, FYVE/PHD-type
Segsegseg 147 169 NANot foundNot found
Segsegseg 173 202 NANot foundNot found
Segsegseg 64 81 NANot foundNot found
Segsegseg 111 120 NANot foundNot found
Segsegseg 2 9 NANot foundNot found
PatternScanPS01359ZF_PHD_1 208 254 NAIPR019786Zinc finger, PHD-type, conserved site
Gene Ontology
GO TermGO TypeDescription
GO:0005515 Molecular Function protein binding
GO:0008270 Molecular Function zinc ion binding
Swiss-Prot
Best HitE_value Description
O814882e-95Y5621_ARATH PHD finger protein At5g26210 OS=Arabidopsis thaliana GN=At5g26210 PE=1 SV=2
TrEMBL
Best HitE_value Description
B9RQU21e-107B9RQU2_RICCO DNA binding protein, putative OS=Ricinus communis GN=RCOM_0706540 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
hmg:1002119986e-11K11728BPTF, E(bx)nucleosome-remodeling factor subunit BPTF
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL25500(2 genes,2 taxa):Brassica oleraceaBol022302
ORTHOMCL25500(2 genes,2 taxa):Brassica rapaBra009887
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:35067783..36982847 (-)A.thalianaChr5:7696135..9426417 (+)210
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:33965676..35286560 (+)B.rapaA09:6919936..7371905 (-)48
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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