Basic Information
Gene Model:Bol022281
Gene Family:Not classificated
Chromosome:C07
Scaffold:Scaffold000108
Sequence:
 | 
Gene Structure
Nucleotide Length:315 bp
Transcript Length:201 bp
Protein Length:66 aa
Strand:-
Location:C07: 35113124 : 35113438
Gene CDSs(2): 1-87 | 202-315 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 51 63 NANot foundNot found
Segsegseg 5 13 NANot foundNot found
PatternScanPS01309UPF0057 21 36 NAIPR000612Uncharacterised protein family UPF0057
HMMPfamPF01679UPF0057 15 65 1e-17IPR000612Uncharacterised protein family UPF0057
HMMPantherPTHR21659HYDROPHOBIC PROTEIN 11 65 1.9e-22IPR000612Uncharacterised protein family UPF0057
Gene Ontology
GO TermGO TypeDescription
GO:0016021 Cellular Component integral to membrane
Swiss-Prot
Best HitE_value Description
Q0DKW88e-20LTI6B_ORYSJ Hydrophobic protein LTI6B OS=Oryza sativa subsp. japonica GN=LTI6B PE=2 SV=1
TrEMBL
Best HitE_value Description
A9NQK44e-19A9NQK4_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL25498(2 genes,2 taxa):Brassica oleraceaBol022281
ORTHOMCL25498(2 genes,2 taxa):Sorghum bicolorSb03g011700.2
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:35067783..36982847 (-)A.thalianaChr5:7696135..9426417 (+)210
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:33965676..35286560 (+)B.rapaA09:6919936..7371905 (-)48
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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