Basic Information
Gene Model:Bol022240
Gene Family:Not classificated
Chromosome:C05
Scaffold:Scaffold000109
Sequence:
 | 
Gene Structure
Nucleotide Length:1822 bp
Transcript Length:810 bp
Protein Length:269 aa
Strand:-
Location:C05: 10318025 : 10319846
Gene CDSs(7): 1-66 | 177-277 | 350-507 | 582-641 | 918-1057 | 1142-1235 | 1632-1822 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50192T_SNARE 176 238 17.049IPR000727Target SNARE coiled-coil region
HMMSmartSM00503no description 15 128 1.1e-21IPR006011Syntaxin, N-terminal
HMMSmartSM00397no description 171 238 2.4e-19IPR000727Target SNARE coiled-coil region
Segsegseg 251 267 NANot foundNot found
Segsegseg 178 196 NANot foundNot found
HMMPantherPTHR19957:SF11SYNTAXIN, PLANT 1 206 2e-111Not foundNot found
HMMPantherPTHR19957SYNTAXIN 1 206 2e-111Not foundNot found
HMMPfamPF05739SNARE 181 243 1.1e-24IPR000727Target SNARE coiled-coil region
HMMPfamPF00804Syntaxin 28 117 5e-13IPR006011Syntaxin, N-terminal
Gene3DG3DSA:1.20.1050.30no description 27 231 3.4e-34Not foundNot found
PatternScanPS00914SYNTAXIN 182 221 NAIPR006012Syntaxin/epimorphin, conserved site
superfamilySSF47661t-snare proteins 17 231 1.9e-37IPR010989t-SNARE
Gene Ontology
GO TermGO TypeDescription
GO:0005484 Molecular Function SNAP receptor activity
GO:0005515 Molecular Function protein binding
GO:0006886 Biological Process intracellular protein transport
GO:0016020 Cellular Component membrane
GO:0016192 Biological Process vesicle-mediated transport
Swiss-Prot
Best HitE_value Description
P936541e-107SYP22_ARATH Syntaxin-22 OS=Arabidopsis thaliana GN=SYP22 PE=1 SV=1
TrEMBL
Best HitE_value Description
B9MU581e-115B9MU58_POPTR Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_826623 PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT5G468601e-107K08488STX7syntaxin 7
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL3338(13 genes,8 taxa):Arabidopsis thalianaAT5G46860.1
ORTHOMCL3338(13 genes,8 taxa):Brassica oleraceaBol008495
ORTHOMCL3338(13 genes,8 taxa):Brassica oleraceaBol020128
ORTHOMCL3338(13 genes,8 taxa):Brassica oleraceaBol022240
ORTHOMCL3338(13 genes,8 taxa):Brassica rapaBra022073
ORTHOMCL3338(13 genes,8 taxa):Brassica rapaBra023256
ORTHOMCL3338(13 genes,8 taxa):Brassica rapaBra024989
ORTHOMCL3338(13 genes,8 taxa):Vitis viniferaGSVIVT01013100001
ORTHOMCL3338(13 genes,8 taxa):Oryza sativaOs01t0254900-01
ORTHOMCL3338(13 genes,8 taxa):Populus trichocarpaPOPTR_0001s02100.1
ORTHOMCL3338(13 genes,8 taxa):Populus trichocarpaPOPTR_0003s09400.1
ORTHOMCL3338(13 genes,8 taxa):Sorghum bicolorSb03g009820.1
ORTHOMCL3338(13 genes,8 taxa):Carica papayaevm.TU.supercontig_43.83
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:9327247..10792130 (-)A.thalianaChr1:11532533..11990482 (+)47
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:9140497..10794934 (+)B.rapaA09:24121347..25005418 (-)51
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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