Basic Information
Gene Model:Bol022191
Gene Family:Not classificated
Chromosome:C05
Scaffold:Scaffold000109
Sequence:
 | 
Gene Structure
Nucleotide Length:5787 bp
Transcript Length:2322 bp
Protein Length:773 aa
Strand:-
Location:C05: 9521562 : 9527348
Gene CDSs(14): 1-289 | 370-458 | 1324-1502 | 1599-1696 | 1777-1868 | 2655-3178 | 3263-3455 | 3520-3634 | 3700-3948 | 4055-4143 | 5116-5246 | 5335-5432 | 5527-5618 | 5704-5787 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:3.40.50.200no description 268 388 2.9e-22IPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
PatternScanPS00138SUBTILASE_SER 316 326 NAIPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
PatternScanPS00136SUBTILASE_ASP 635 646 NAIPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
HMMPfamPF05922Inhibitor_I9 525 605 7.3e-27IPR010259Proteinase inhibitor I9, subtilisin propeptide
HMMPfamPF02225PA 654 757 5.2e-25IPR003137Protease-associated PA
HMMPfamPF02225PA 141 244 1.1e-19IPR003137Protease-associated PA
HMMPfamPF00082Peptidase_S8 285 345 3.2e-08IPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
HMMPfamPF05922Inhibitor_I9 28 108 4.7e-28IPR010259Proteinase inhibitor I9, subtilisin propeptide
HMMPantherPTHR10795:SF17SUBTILISIN-LIKE PROT 135 528 7e-172Not foundNot found
HMMPantherPTHR10795SUBTILISIN/KEXIN-REL 135 528 7e-172IPR015500Peptidase S8, subtilisin-related
superfamilySSF54897Protease propeptides 522 605 4.6e-07IPR009020Proteinase inhibitor, propeptide
superfamilySSF52743Subtilisin-like 587 646 9.8e-09IPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
superfamilySSF52743Subtilisin-like 269 392 1.4e-27IPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
superfamilySSF54897Protease propeptides 25 108 6.2e-09IPR009020Proteinase inhibitor, propeptide
Segsegseg 466 478 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0004252 Molecular Function serine-type endopeptidase activity
GO:0006508 Biological Process proteolysis
GO:0042802 Molecular Function identical protein binding
GO:0043086 Biological Process negative regulation of catalytic activity
Swiss-Prot
Best HitE_value Description
O653517e-51SUBL_ARATH Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q9MAP70.0Q9MAP7_ARATH First of four adjacent putative subtilase family > OS=Arabidopsis thaliana GN=At1g32940 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL88(65 genes,8 taxa):Arabidopsis thalianaAT1G32940.1
ORTHOMCL88(65 genes,8 taxa):Arabidopsis thalianaAT1G32950.1
ORTHOMCL88(65 genes,8 taxa):Arabidopsis thalianaAT1G32960.1
ORTHOMCL88(65 genes,8 taxa):Arabidopsis thalianaAT1G32970.1
ORTHOMCL88(65 genes,8 taxa):Arabidopsis thalianaAT4G10510.1
ORTHOMCL88(65 genes,8 taxa):Arabidopsis thalianaAT4G10520.1
ORTHOMCL88(65 genes,8 taxa):Arabidopsis thalianaAT4G10530.1
ORTHOMCL88(65 genes,8 taxa):Arabidopsis thalianaAT4G10540.1
ORTHOMCL88(65 genes,8 taxa):Arabidopsis thalianaAT4G10550.1
ORTHOMCL88(65 genes,8 taxa):Arabidopsis thalianaAT4G21323.1
ORTHOMCL88(65 genes,8 taxa):Arabidopsis thalianaAT4G21630.1
ORTHOMCL88(65 genes,8 taxa):Arabidopsis thalianaAT4G21640.1
ORTHOMCL88(65 genes,8 taxa):Arabidopsis thalianaAT4G21650.1
ORTHOMCL88(65 genes,8 taxa):Arabidopsis thalianaAT5G11940.1
ORTHOMCL88(65 genes,8 taxa):Brassica oleraceaBol003579
ORTHOMCL88(65 genes,8 taxa):Brassica oleraceaBol022191
ORTHOMCL88(65 genes,8 taxa):Brassica oleraceaBol024298
ORTHOMCL88(65 genes,8 taxa):Brassica oleraceaBol024299
ORTHOMCL88(65 genes,8 taxa):Brassica oleraceaBol028435
ORTHOMCL88(65 genes,8 taxa):Brassica rapaBra004153
ORTHOMCL88(65 genes,8 taxa):Brassica rapaBra004154
ORTHOMCL88(65 genes,8 taxa):Brassica rapaBra013544
ORTHOMCL88(65 genes,8 taxa):Brassica rapaBra022966
ORTHOMCL88(65 genes,8 taxa):Brassica rapaBra023297
ORTHOMCL88(65 genes,8 taxa):Brassica rapaBra023300
ORTHOMCL88(65 genes,8 taxa):Brassica rapaBra023349
ORTHOMCL88(65 genes,8 taxa):Brassica rapaBra033170
ORTHOMCL88(65 genes,8 taxa):Brassica rapaBra037906
ORTHOMCL88(65 genes,8 taxa):Brassica rapaBra038766
ORTHOMCL88(65 genes,8 taxa):Brassica rapaBra038768
ORTHOMCL88(65 genes,8 taxa):Brassica rapaBra038777
ORTHOMCL88(65 genes,8 taxa):Brassica rapaBra038778
ORTHOMCL88(65 genes,8 taxa):Vitis viniferaGSVIVT01019686001
ORTHOMCL88(65 genes,8 taxa):Vitis viniferaGSVIVT01019687001
ORTHOMCL88(65 genes,8 taxa):Vitis viniferaGSVIVT01024195001
ORTHOMCL88(65 genes,8 taxa):Vitis viniferaGSVIVT01038620001
ORTHOMCL88(65 genes,8 taxa):Vitis viniferaGSVIVT01038641001
ORTHOMCL88(65 genes,8 taxa):Vitis viniferaGSVIVT01038642001
ORTHOMCL88(65 genes,8 taxa):Oryza sativaOs01t0794800-01
ORTHOMCL88(65 genes,8 taxa):Oryza sativaOs01t0795000-01
ORTHOMCL88(65 genes,8 taxa):Oryza sativaOs01t0795200-01
ORTHOMCL88(65 genes,8 taxa):Oryza sativaOs02t0269600-00
ORTHOMCL88(65 genes,8 taxa):Oryza sativaOs02t0270200-01
ORTHOMCL88(65 genes,8 taxa):Oryza sativaOs02t0270900-00
ORTHOMCL88(65 genes,8 taxa):Oryza sativaOs02t0271000-01
ORTHOMCL88(65 genes,8 taxa):Oryza sativaOs04t0121100-01
ORTHOMCL88(65 genes,8 taxa):Oryza sativaOs04t0121300-00
ORTHOMCL88(65 genes,8 taxa):Oryza sativaOs04t0127200-01
ORTHOMCL88(65 genes,8 taxa):Oryza sativaOs04t0127200-02
ORTHOMCL88(65 genes,8 taxa):Oryza sativaOs04t0127300-01
ORTHOMCL88(65 genes,8 taxa):Populus trichocarpaPOPTR_0001s45450.1
ORTHOMCL88(65 genes,8 taxa):Populus trichocarpaPOPTR_0001s45470.1
ORTHOMCL88(65 genes,8 taxa):Populus trichocarpaPOPTR_0001s45480.1
ORTHOMCL88(65 genes,8 taxa):Populus trichocarpaPOPTR_0001s45490.1
ORTHOMCL88(65 genes,8 taxa):Populus trichocarpaPOPTR_0004s16850.1
ORTHOMCL88(65 genes,8 taxa):Populus trichocarpaPOPTR_0009s12610.1
ORTHOMCL88(65 genes,8 taxa):Populus trichocarpaPOPTR_0011s15400.1
ORTHOMCL88(65 genes,8 taxa):Populus trichocarpaPOPTR_0011s15440.1
ORTHOMCL88(65 genes,8 taxa):Sorghum bicolorSb02g030760.1
ORTHOMCL88(65 genes,8 taxa):Sorghum bicolorSb03g037010.1
ORTHOMCL88(65 genes,8 taxa):Sorghum bicolorSb05g022600.1
ORTHOMCL88(65 genes,8 taxa):Sorghum bicolorSb05g022620.1
ORTHOMCL88(65 genes,8 taxa):Sorghum bicolorSb06g001140.1
ORTHOMCL88(65 genes,8 taxa):Carica papayaevm.TU.supercontig_1420.2
ORTHOMCL88(65 genes,8 taxa):Carica papayaevm.TU.supercontig_1497.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:9327247..10792130 (-)A.thalianaChr1:11532533..11990482 (+)47
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:9140497..10794934 (+)B.rapaA09:24121347..25005418 (-)51
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
BAT1G329401193759611940978Chr1Subgenome_III(LF)112
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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