Basic Information
Gene Model:Bol022144
Gene Family:Not classificated
Chromosome:C08
Scaffold:Scaffold000110
Sequence:
 | 
Gene Structure
Nucleotide Length:2083 bp
Transcript Length:1281 bp
Protein Length:426 aa
Strand:-
Location:C08: 17245671 : 17247753
Gene CDSs(7): 1-210 | 301-472 | 548-765 | 879-986 | 1083-1208 | 1528-1757 | 1867-2083 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:3.60.40.10no description 46 297 8.4e-48IPR001932Protein phosphatase 2C-related
HMMPfamPF00481PP2C 61 290 3.9e-29IPR014045Protein phosphatase 2C, N-terminal
HMMPantherPTHR13832:SF25PROTEIN PHOSPHATASE, 22 365 1.3e-191Not foundNot found
HMMPantherPTHR13832PROTEIN PHOSPHATASE 22 365 1.3e-191IPR015655Protein phosphatase 2C
superfamilySSF81606Protein serine/threo 11 297 4.5e-51IPR001932Protein phosphatase 2C-related
Segsegseg 174 183 NANot foundNot found
HMMSmartSM00331no description 30 297 0.0021IPR001932Protein phosphatase 2C-related
HMMSmartSM00332no description 25 295 1.5e-61IPR001932Protein phosphatase 2C-related
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
Swiss-Prot
Best HitE_value Description
O804920.0P2C05_ARATH Probable protein phosphatase 2C 5 OS=Arabidopsis thaliana GN=At1g09160 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9RFF80.0B9RFF8_RICCO Protein phosphatase, putative OS=Ricinus communis GN=RCOM_1434210 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT4G260802e-24K14497PP2Cprotein phosphatase 2C
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL958(20 genes,8 taxa):Arabidopsis thalianaAT1G09160.2
ORTHOMCL958(20 genes,8 taxa):Arabidopsis thalianaAT1G68410.1
ORTHOMCL958(20 genes,8 taxa):Brassica oleraceaBol001933
ORTHOMCL958(20 genes,8 taxa):Brassica oleraceaBol022144
ORTHOMCL958(20 genes,8 taxa):Brassica rapaBra030759
ORTHOMCL958(20 genes,8 taxa):Brassica rapaBra033938
ORTHOMCL958(20 genes,8 taxa):Vitis viniferaGSVIVT01011853001
ORTHOMCL958(20 genes,8 taxa):Vitis viniferaGSVIVT01031195001
ORTHOMCL958(20 genes,8 taxa):Oryza sativaOs03t0301700-01
ORTHOMCL958(20 genes,8 taxa):Oryza sativaOs07t0690400-01
ORTHOMCL958(20 genes,8 taxa):Oryza sativaOs07t0690400-02
ORTHOMCL958(20 genes,8 taxa):Populus trichocarpaPOPTR_0005s02110.1
ORTHOMCL958(20 genes,8 taxa):Populus trichocarpaPOPTR_0008s12270.1
ORTHOMCL958(20 genes,8 taxa):Populus trichocarpaPOPTR_0010s13130.1
ORTHOMCL958(20 genes,8 taxa):Populus trichocarpaPOPTR_0013s01300.1
ORTHOMCL958(20 genes,8 taxa):Sorghum bicolorSb01g037810.1
ORTHOMCL958(20 genes,8 taxa):Sorghum bicolorSb02g043760.1
ORTHOMCL958(20 genes,8 taxa):Sorghum bicolorSb03g016300.1
ORTHOMCL958(20 genes,8 taxa):Carica papayaevm.TU.supercontig_37.21
ORTHOMCL958(20 genes,8 taxa):Carica papayaevm.TU.supercontig_65.54
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:16527338..18299207 (+)A.thalianaChr1:2646189..3698013 (+)124
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:17025073..17574194 (+)B.rapaA09:31150957..31708720 (-)11
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
AAT1G0916029527712955689Chr1Subgenome_II291
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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