Basic Information
Gene Model:Bol022049
Gene Family:Not classificated
Chromosome:C08
Scaffold:Scaffold000110
Sequence:
 | 
Gene Structure
Nucleotide Length:1102 bp
Transcript Length:744 bp
Protein Length:247 aa
Strand:-
Location:C08: 17952775 : 17953876
Gene CDSs(4): 1-175 | 268-344 | 518-595 | 689-1102 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50110RESPONSE_REGULATORY 34 161 26.066IPR001789Signal transduction response regulator, receiver region
Gene3DG3DSA:3.40.50.2300no description 27 160 3.5e-24Not foundNot found
HMMPantherPTHR23283:SF40TWO-COMPONENT SENSOR 30 165 4.9e-15Not foundNot found
HMMPantherPTHR23283SENSOR HISTIDINE KIN 30 165 4.9e-15Not foundNot found
superfamilySSF52172CheY-like 30 156 1.3e-26IPR011006CheY-like
HMMPfamPF00072Response_reg 35 157 4.2e-23IPR001789Signal transduction response regulator, receiver region
HMMSmartSM00448no description 33 160 1.9e-20IPR001789Signal transduction response regulator, receiver region
Segsegseg 178 209 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0000156 Molecular Function two-component response regulator activity
GO:0000160 Biological Process two-component signal transduction system (phosphorelay)
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
O827981e-102ARR4_ARATH Two-component response regulator ARR4 OS=Arabidopsis thaliana GN=ARR4 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q2HIV31e-101Q2HIV3_ARATH At1g10470 OS=Arabidopsis thaliana GN=At1g10470 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G104701e-102K14492ARR-Atwo-component response regulator ARR-A family
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL15210(4 genes,4 taxa):Arabidopsis thalianaAT1G10470.1
ORTHOMCL15210(4 genes,4 taxa):Brassica oleraceaBol022049
ORTHOMCL15210(4 genes,4 taxa):Brassica rapaBra018439
ORTHOMCL15210(4 genes,4 taxa):Carica papayaevm.TU.supercontig_5.323
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:16527338..18299207 (+)A.thalianaChr1:2646189..3698013 (+)124
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:17482713..18286435 (+)B.rapaA09:1797368..2139715 (+)27
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
AAT1G1047034423273443957Chr1Subgenome_II291
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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