Basic Information
Gene Model:Bol021976
Gene Family:Transcription Factor Families
Chromosome:C01
Scaffold:Scaffold000111
Sequence:
 | 
Gene Structure
Nucleotide Length:1256 bp
Transcript Length:900 bp
Protein Length:299 aa
Strand:+
Location:C01: 18184799 : 18186054
Gene CDSs(5): 1-150 | 242-456 | 545-629 | 722-805 | 891-1256 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS51294HTH_MYB 1 61 11.950IPR017930Myb-type HTH DNA-binding domain
Coilcoilcoiled-coil 232 267 NANot foundNot found
HMMPantherPTHR21717:SF9TELOMERIC REPEAT BIN 5 61 4.7e-07Not foundNot found
HMMPantherPTHR21717TELOMERIC REPEAT BIN 5 61 4.7e-07Not foundNot found
Segsegseg 228 278 NANot foundNot found
Segsegseg 100 113 NANot foundNot found
Gene3DG3DSA:1.10.10.10no description 114 198 3.2e-05IPR011991Winged helix repressor DNA-binding
Gene3DG3DSA:1.10.10.60no description 1 68 9.4e-14IPR012287Homeodomain-related
superfamilySSF46689Homeodomain-like 1 68 2.1e-07IPR009057Homeodomain-like
superfamilySSF46785"Winged helix" DNA-b 115 200 2.6e-11Not foundNot found
HMMPfamPF00249Myb_DNA-binding 5 57 4.1e-06IPR014778Myb, DNA-binding
HMMSmartSM00717no description 4 59 2.5e-05IPR001005SANT, DNA-binding
HMMSmartSM00526no description 109 182 2.3e-06IPR005818Histone H1/H5
Gene Ontology
GO TermGO TypeDescription
GO:0000786 Cellular Component nucleosome
GO:0003677 Molecular Function DNA binding
GO:0005634 Cellular Component nucleus
GO:0006334 Biological Process nucleosome assembly
GO:0045449 Biological Process regulation of transcription
Swiss-Prot
Best HitE_value Description

Note: best hit of this gene was not detected in Swiss-Prot database.

TrEMBL
Best HitE_value Description
Q9M2X33e-87Q9M2X3_ARATH MYB-like protein OS=Arabidopsis thaliana GN=T16K5.200 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT3G498504e-88K09422MYBPmyb proto-oncogene protein, plant
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL18591(3 genes,3 taxa):Arabidopsis thalianaAT3G49850.1
ORTHOMCL18591(3 genes,3 taxa):Brassica oleraceaBol021976
ORTHOMCL18591(3 genes,3 taxa):Brassica rapaBra029978
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:17239053..18468716 (+)A.thalianaChr3:18140771..18574514 (+)40
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:16595418..18529684 (+)B.rapaA01:22863392..23888612 (+)54
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
MAT3G498501848903418490996Chr3Subgenome_I82
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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