Basic Information
Gene Model:Bol021964
Gene Family:Transcription Factor Families
Chromosome:C01
Scaffold:Scaffold000111
Sequence:
 | 
Gene Structure
Nucleotide Length:573 bp
Transcript Length:573 bp
Protein Length:190 aa
Strand:-
Location:C01: 18057794 : 18058366
Gene CDSs(1): 1-573 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50217BZIP 72 135 10.220IPR004827Basic-leucine zipper (bZIP) transcription factor
HMMSmartSM00338no description 70 134 2.2e-06IPR004827Basic-leucine zipper (bZIP) transcription factor
Coilcoilcoiled-coil 97 118 NANot foundNot found
HMMPfamPF07716bZIP_2 70 124 1.7e-07IPR011700Basic leucine zipper
Gene Ontology
GO TermGO TypeDescription
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0005634 Cellular Component nucleus
GO:0006355 Biological Process regulation of transcription, DNA-dependent
GO:0043565 Molecular Function sequence-specific DNA binding
GO:0046983 Molecular Function protein dimerization activity
Swiss-Prot
Best HitE_value Description
P240681e-09OCS1_MAIZE Ocs element-binding factor 1 OS=Zea mays GN=OBF1 PE=2 SV=2
TrEMBL
Best HitE_value Description
Q8L5U93e-53Q8L5U9_ARATH BZIP transcription factor-like protein OS=Arabidopsis thaliana PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
rcu:RCOM_05532505e-09K09060GBFplant G-box-binding factor
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL11446(7 genes,5 taxa):Arabidopsis thalianaAT2G22850.1
ORTHOMCL11446(7 genes,5 taxa):Arabidopsis thalianaAT3G49760.1
ORTHOMCL11446(7 genes,5 taxa):Brassica oleraceaBol021964
ORTHOMCL11446(7 genes,5 taxa):Brassica oleraceaBol037334
ORTHOMCL11446(7 genes,5 taxa):Brassica rapaBra036025
ORTHOMCL11446(7 genes,5 taxa):Populus trichocarpaPOPTR_0007s14740.1
ORTHOMCL11446(7 genes,5 taxa):Carica papayaevm.TU.supercontig_129.73
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:17239053..18468716 (+)A.thalianaChr3:18140771..18574514 (+)40
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:16595418..18529684 (+)B.rapaA01:22863392..23888612 (+)54
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
MAT3G497601845534718456125Chr3Subgenome_I82
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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