Basic Information
Gene Model:Bol021803
Gene Family:Not classificated
Chromosome:C04
Scaffold:Scaffold000114
Sequence:
 | 
Gene Structure
Nucleotide Length:2196 bp
Transcript Length:1416 bp
Protein Length:471 aa
Strand:+
Location:C04: 40801098 : 40803293
Gene CDSs(6): 1-190 | 647-808 | 906-1036 | 1114-1493 | 1580-2033 | 2098-2196 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR23283SENSOR HISTIDINE KIN 39 158 2.6e-15Not foundNot found
HMMPantherPTHR23283:SF47SENSORY TRANSDUCTION 39 158 2.6e-15Not foundNot found
HMMPfamPF06203CCT 420 464 7.3e-23IPR010402CCT domain
HMMPfamPF00072Response_reg 40 154 4.9e-25IPR001789Signal transduction response regulator, receiver region
superfamilySSF52172CheY-like 35 169 3.3e-29IPR011006CheY-like
ProfileScanPS50110RESPONSE_REGULATORY 39 157 28.524IPR001789Signal transduction response regulator, receiver region
ProfileScanPS51017CCT 420 462 15.418IPR010402CCT domain
Segsegseg 402 410 NANot foundNot found
Segsegseg 292 311 NANot foundNot found
HMMSmartSM00448no description 38 153 4.1e-24IPR001789Signal transduction response regulator, receiver region
Gene3DG3DSA:3.40.50.2300no description 39 179 7.2e-26Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0000156 Molecular Function two-component response regulator activity
GO:0000160 Biological Process two-component signal transduction system (phosphorelay)
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q8L5000.0APRR9_ARATH Two-component response regulator-like APRR9 OS=Arabidopsis thaliana GN=APRR9 PE=2 SV=2
TrEMBL
Best HitE_value Description
Q56XM10.0Q56XM1_ARATH Putative uncharacterized protein At2g46790 OS=Arabidopsis thaliana GN=At2g46790 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT2G467900.0K12128APRR9pseudo-response regulator 9
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1529(17 genes,8 taxa):Arabidopsis thalianaAT2G46790.1
ORTHOMCL1529(17 genes,8 taxa):Arabidopsis thalianaAT2G46800.1
ORTHOMCL1529(17 genes,8 taxa):Arabidopsis thalianaAT3G58810.1
ORTHOMCL1529(17 genes,8 taxa):Brassica oleraceaBol004901
ORTHOMCL1529(17 genes,8 taxa):Brassica oleraceaBol021803
ORTHOMCL1529(17 genes,8 taxa):Brassica oleraceaBol021804
ORTHOMCL1529(17 genes,8 taxa):Brassica rapaBra000432
ORTHOMCL1529(17 genes,8 taxa):Brassica rapaBra040484
ORTHOMCL1529(17 genes,8 taxa):Vitis viniferaGSVIVT01019690001
ORTHOMCL1529(17 genes,8 taxa):Oryza sativaOs05t0128400-01
ORTHOMCL1529(17 genes,8 taxa):Populus trichocarpaPOPTR_0001s45520.1
ORTHOMCL1529(17 genes,8 taxa):Populus trichocarpaPOPTR_0002s18080.1
ORTHOMCL1529(17 genes,8 taxa):Populus trichocarpaPOPTR_0011s15370.1
ORTHOMCL1529(17 genes,8 taxa):Populus trichocarpaPOPTR_0014s10180.1
ORTHOMCL1529(17 genes,8 taxa):Sorghum bicolorSb09g002460.2
ORTHOMCL1529(17 genes,8 taxa):Carica papayaevm.TU.supercontig_37.103
ORTHOMCL1529(17 genes,8 taxa):Carica papayaevm.TU.supercontig_57.83
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:39442711..40858375 (+)A.thalianaChr2:17782308..19326397 (+)182
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:39453447..40858375 (+)B.rapaA09:13179624..14472702 (+)58
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
JAT2G467901923264919235076Chr2Subgenome_I257
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


logo