Basic Information
Gene Model:Bol021760
Gene Family:Protein Kinase Gene Families
Chromosome:C04
Scaffold:Scaffold000114
Sequence:
 | 
Gene Structure
Nucleotide Length:3649 bp
Transcript Length:2502 bp
Protein Length:833 aa
Strand:+
Location:C04: 40486202 : 40489850
Gene CDSs(8): 1-271 | 357-478 | 597-718 | 919-1023 | 1108-1390 | 1473-1607 | 2113-3390 | 3464-3649 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00069Pkinase 483 677 1.3e-44IPR017442Serine/threonine-protein kinase-like domain
HMMPfamPF04564U-box 762 832 7.4e-28IPR003613U box domain
BlastProDomPD095266Q32D56_SHIDY_Q32D56; 310 430 0.005IPR020231Uncharacterised protein family, YfgI
superfamilySSF57850RING/U-box 758 832 2.5e-17Not foundNot found
superfamilySSF56112Protein kinase-like 472 738 3.6e-64IPR011009Protein kinase-like domain
Segsegseg 437 459 NANot foundNot found
Segsegseg 23 42 NANot foundNot found
Segsegseg 94 116 NANot foundNot found
PatternScanPS00107PROTEIN_KINASE_ATP 489 510 NAIPR017441Protein kinase, ATP binding site
PatternScanPS00108PROTEIN_KINASE_ST 601 613 NAIPR008271Serine/threonine-protein kinase, active site
HMMPantherPTHR23258SERINE-THREONINE PRO 359 828 3.6e-251Not foundNot found
HMMPantherPTHR23258:SF448RECEPTOR PROTEIN KIN 359 828 3.6e-251Not foundNot found
HMMSmartSM00504no description 765 828 1.2e-31IPR003613U box domain
HMMSmartSM00220no description 483 742 6e-30IPR002290Serine/threonine-protein kinase domain
HMMSmartSM00219no description 483 738 6.8e-15IPR020635Tyrosine-protein kinase, subgroup, catalytic domain
Coilcoilcoiled-coil 382 452 NANot foundNot found
ProfileScanPS50011PROTEIN_KINASE_DOM 483 743 33.291IPR000719Protein kinase, catalytic domain
Gene3DG3DSA:1.10.510.10no description 555 767 2.8e-37Not foundNot found
Gene3DG3DSA:3.30.200.20no description 464 555 4.6e-18Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0000151 Cellular Component ubiquitin ligase complex
GO:0004672 Molecular Function protein kinase activity
GO:0004674 Molecular Function protein serine/threonine kinase activity
GO:0004842 Molecular Function ubiquitin-protein ligase activity
GO:0005524 Molecular Function ATP binding
GO:0006468 Biological Process protein phosphorylation
GO:0016567 Biological Process protein ubiquitination
Swiss-Prot
Best HitE_value Description
Q8GUH10.0PUB33_ARATH U-box domain-containing protein 33 OS=Arabidopsis thaliana GN=PUB33 PE=2 SV=2
TrEMBL
Best HitE_value Description
A7PZH00.0A7PZH0_VITVI Chromosome chr15 scaffold_40, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00026876001 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT5G389901e-47K04733IRAK4interleukin-1 receptor-associated kinase 4
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL726(23 genes,8 taxa):Arabidopsis thalianaAT2G45910.1
ORTHOMCL726(23 genes,8 taxa):Arabidopsis thalianaAT3G49060.1
ORTHOMCL726(23 genes,8 taxa):Brassica oleraceaBol003480
ORTHOMCL726(23 genes,8 taxa):Brassica oleraceaBol021760
ORTHOMCL726(23 genes,8 taxa):Brassica oleraceaBol030222
ORTHOMCL726(23 genes,8 taxa):Brassica oleraceaBol037390
ORTHOMCL726(23 genes,8 taxa):Brassica rapaBra004947
ORTHOMCL726(23 genes,8 taxa):Brassica rapaBra018013
ORTHOMCL726(23 genes,8 taxa):Brassica rapaBra019576
ORTHOMCL726(23 genes,8 taxa):Brassica rapaBra039305
ORTHOMCL726(23 genes,8 taxa):Vitis viniferaGSVIVT01026936001
ORTHOMCL726(23 genes,8 taxa):Vitis viniferaGSVIVT01028909001
ORTHOMCL726(23 genes,8 taxa):Oryza sativaOs02t0665500-01
ORTHOMCL726(23 genes,8 taxa):Oryza sativaOs10t0548700-01
ORTHOMCL726(23 genes,8 taxa):Oryza sativaOs10t0548700-02
ORTHOMCL726(23 genes,8 taxa):Populus trichocarpaPOPTR_0002s16150.1
ORTHOMCL726(23 genes,8 taxa):Populus trichocarpaPOPTR_0002s16160.1
ORTHOMCL726(23 genes,8 taxa):Populus trichocarpaPOPTR_0012s13020.1
ORTHOMCL726(23 genes,8 taxa):Populus trichocarpaPOPTR_0014s08060.1
ORTHOMCL726(23 genes,8 taxa):Sorghum bicolorSb04g032450.1
ORTHOMCL726(23 genes,8 taxa):Carica papayaevm.TU.supercontig_107.71
ORTHOMCL726(23 genes,8 taxa):Carica papayaevm.TU.supercontig_11.7
ORTHOMCL726(23 genes,8 taxa):Carica papayaevm.TU.supercontig_11.9
Tandem Duplication
ClusterGene Num.Gene List
Cluster_6352Bol021760 Bol021761 
Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:39682793..40670467 (+)A.thalianaChr3:21911601..22787972 (+)56
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:39453447..40858375 (+)B.rapaA09:13179624..14472702 (+)58
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
JAT2G459101889407418898528Chr2Subgenome_I257
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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