Basic Information
Gene Model:Bol021666
Gene Family:Transcription Factor Families
Chromosome:C04
Scaffold:Scaffold000114
Sequence:
 | 
Gene Structure
Nucleotide Length:1143 bp
Transcript Length:771 bp
Protein Length:256 aa
Strand:-
Location:C04: 39994888 : 39996030
Gene CDSs(4): 1-240 | 333-481 | 565-847 | 1045-1143 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 155 163 NANot foundNot found
ProfileScanPS50863B3 162 255 12.661IPR003340Transcriptional factor B3
Gene3DG3DSA:2.40.330.10no description 9 116 2.8e-16Not foundNot found
Gene3DG3DSA:2.40.330.10no description 155 255 0.00017Not foundNot found
ProfileScanPS50863B3 19 114 12.421IPR003340Transcriptional factor B3
HMMPfamPF02362B3 164 252 6.4e-16IPR003340Transcriptional factor B3
HMMPfamPF02362B3 18 116 7.6e-20IPR003340Transcriptional factor B3
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q9FK612e-46Y5809_ARATH B3 domain-containing protein At5g18090 OS=Arabidopsis thaliana GN=At5g18090 PE=2 SV=1
TrEMBL
Best HitE_value Description
A5AN702e-16A5AN70_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027623 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL25426(2 genes,2 taxa):Brassica oleraceaBol021666
ORTHOMCL25426(2 genes,2 taxa):Brassica rapaBra037663
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:39682793..40670467 (+)A.thalianaChr3:21911601..22787972 (+)56
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:39453447..40858375 (+)B.rapaA09:13179624..14472702 (+)58
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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