Basic Information
Gene Model:Bol021564
Gene Family:14-3-3 Gene Family
Chromosome:C06
Scaffold:Scaffold000115
Sequence:
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Gene Structure
Nucleotide Length:1306 bp
Transcript Length:783 bp
Protein Length:260 aa
Strand:-
Location:C06: 31361160 : 31362465
Gene CDSs(4): 1-63 | 155-271 | 389-511 | 827-1306 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF4844514-3-3 protein 3 238 8.9e-107IPR00030814-3-3 protein
Gene3DG3DSA:1.20.190.20no description 4 252 2.9e-107IPR00030814-3-3 protein
HMMPantherPTHR1886014-3-3 1 256 1.7e-210IPR00030814-3-3 protein
HMMSmartSM00101no description 6 249 3.5e-204IPR00030814-3-3 protein
PatternScanPS007961433_1 46 56 NAIPR00030814-3-3 protein
PatternScanPS007971433_2 218 237 NAIPR00030814-3-3 protein
Coilcoilcoiled-coil 12 33 NANot foundNot found
HMMPIRPIRSF00086814-3-3 protein 4 248 3.2e-178IPR00030814-3-3 protein
HMMPfamPF0024414-3-3 6 243 5.5e-151IPR00030814-3-3 protein
Gene Ontology
GO TermGO TypeDescription
GO:0019904 Molecular Function protein domain specific binding
Swiss-Prot
Best HitE_value Description
Q015251e-14514332_ARATH 14-3-3-like protein GF14 omega OS=Arabidopsis thaliana GN=GRF2 PE=1 SV=2
TrEMBL
Best HitE_value Description
Q9AT811e-148Q9AT81_BRANA GF14 omega OS=Brassica napus PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
pop:POPTR_7116171e-134K06630YWHAtyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL12689(6 genes,5 taxa):Arabidopsis thalianaAT1G78300.1
ORTHOMCL12689(6 genes,5 taxa):Brassica oleraceaBol021564
ORTHOMCL12689(6 genes,5 taxa):Brassica rapaBra003649
ORTHOMCL12689(6 genes,5 taxa):Populus trichocarpaPOPTR_0002s10000.1
ORTHOMCL12689(6 genes,5 taxa):Populus trichocarpaPOPTR_0005s17300.1
ORTHOMCL12689(6 genes,5 taxa):Carica papayaevm.TU.supercontig_36.165
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:30636415..31384453 (-)A.thalianaChr1:29364249..29999045 (+)54
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:29953865..31384453 (+)B.rapaA07:13749773..14414490 (+)104
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
EAT1G783002946167129463385Chr1Subgenome_II331
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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