Basic Information
Gene Model:Bol021521
Gene Family:Sulfurtransferasese/Rhodanese Gene Family
Chromosome:C06
Scaffold:Scaffold000115
Sequence:
 | 
Gene Structure
Nucleotide Length:2527 bp
Transcript Length:1140 bp
Protein Length:379 aa
Strand:-
Location:C06: 30902594 : 30905120
Gene CDSs(12): 1-108 | 232-299 | 382-448 | 573-654 | 730-788 | 970-1029 | 1126-1288 | 1396-1520 | 1729-1791 | 1891-1950 | 2036-2215 | 2423-2527 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF52821Rhodanese/Cell cycle 71 207 2.6e-40IPR001763Rhodanese-like
superfamilySSF52821Rhodanese/Cell cycle 236 375 8.7e-39IPR001763Rhodanese-like
HMMSmartSM00450no description 248 370 1.3e-20IPR001763Rhodanese-like
PatternScanPS00380RHODANESE_1 114 125 NAIPR001307Thiosulphate sulfurtransferase, conserved site
PatternScanPS00683RHODANESE_2 354 364 NAIPR001307Thiosulphate sulfurtransferase, conserved site
HMMSmartSM00450no description 80 204 6.7e-24IPR001763Rhodanese-like
HMMPantherPTHR11364THIOSULFATE SULFERTA 76 377 2.5e-118Not foundNot found
Gene3DG3DSA:3.40.250.10no description 249 372 1e-36IPR001763Rhodanese-like
ProfileScanPS50206RHODANESE_3 258 373 20.172IPR001763Rhodanese-like
Gene3DG3DSA:3.40.250.10no description 77 208 1.8e-42IPR001763Rhodanese-like
ProfileScanPS50206RHODANESE_3 90 207 20.731IPR001763Rhodanese-like
HMMPfamPF00581Rhodanese 81 201 6.2e-21IPR001763Rhodanese-like
HMMPfamPF00581Rhodanese 249 367 1.6e-26IPR001763Rhodanese-like
Gene Ontology
GO TermGO TypeDescription
GO:0004792 Molecular Function thiosulfate sulfurtransferase activity
GO:0008272 Biological Process sulfate transport
Swiss-Prot
Best HitE_value Description
P253252e-61THTM_HUMAN 3-mercaptopyruvate sulfurtransferase OS=Homo sapiens GN=MPST PE=1 SV=3
TrEMBL
Best HitE_value Description
C7E6400.0C7E640_BRANA Mercapto-pyruvate sulfurtransferase 1 OS=Brassica napus GN=ST1 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
rcu:RCOM_15747401e-162K01011TST, MPST, sseA--
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL4598(11 genes,8 taxa):Arabidopsis thalianaAT1G79230.1
ORTHOMCL4598(11 genes,8 taxa):Brassica oleraceaBol021521
ORTHOMCL4598(11 genes,8 taxa):Brassica oleraceaBol038520
ORTHOMCL4598(11 genes,8 taxa):Brassica rapaBra003617
ORTHOMCL4598(11 genes,8 taxa):Brassica rapaBra035101
ORTHOMCL4598(11 genes,8 taxa):Vitis viniferaGSVIVT01036786001
ORTHOMCL4598(11 genes,8 taxa):Oryza sativaOs12t0608600-01
ORTHOMCL4598(11 genes,8 taxa):Oryza sativaOs12t0608600-02
ORTHOMCL4598(11 genes,8 taxa):Populus trichocarpaPOPTR_0005s09820.1
ORTHOMCL4598(11 genes,8 taxa):Sorghum bicolorSb08g020860.1
ORTHOMCL4598(11 genes,8 taxa):Carica papayaevm.TU.supercontig_34.16
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:30636415..31384453 (-)A.thalianaChr1:29364249..29999045 (+)54
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:30202821..31308146 (+)B.rapaA09:2463329..2864531 (-)20
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
EAT1G792302980069329803939Chr1Subgenome_II331
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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