Basic Information
Gene Model:Bol021434
Gene Family:Not classificated
Chromosome:C06
Scaffold:Scaffold000115
Sequence:
 | 
Gene Structure
Nucleotide Length:1495 bp
Transcript Length:579 bp
Protein Length:192 aa
Strand:-
Location:C06: 30098035 : 30099529
Gene CDSs(6): 1-75 | 204-262 | 411-560 | 668-760 | 1187-1297 | 1405-1495 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 151 163 NANot foundNot found
superfamilySSF53271PRTase-like 8 181 2.5e-55Not foundNot found
HAMAPMF_00004APT_MF_00004 15 184 31.223IPR005764Adenine phosphoribosyl transferase
HMMTigrTIGR01090apt: adenine phospho 17 184 8.7e-77IPR005764Adenine phosphoribosyl transferase
HMMPfamPF00156Pribosyltran 38 162 3.8e-43IPR000836Phosphoribosyltransferase
HMMPantherPTHR10210RIBOSE-PHOSPHATE PYR 129 161 0.00032Not foundNot found
Gene3DG3DSA:3.40.50.2020no description 8 190 4.3e-57Not foundNot found
HMMPantherPTHR10210:SF3RIBOSE-PHOSPHATE PYR 129 161 0.00032Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003999 Molecular Function adenine phosphoribosyltransferase activity
GO:0006168 Biological Process adenine salvage
GO:0009116 Biological Process nucleoside metabolic process
Swiss-Prot
Best HitE_value Description
Q425631e-102APT2_ARATH Adenine phosphoribosyltransferase 2 OS=Arabidopsis thaliana GN=APT2 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9RV892e-83B9RV89_RICCO Adenine phosphoribosyltransferase, putative OS=Ricinus communis GN=RCOM_0901050 PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G800501e-101K00759E2.4.2.7, aptadenine phosphoribosyltransferase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL2406(14 genes,8 taxa):Arabidopsis thalianaAT1G80050.1
ORTHOMCL2406(14 genes,8 taxa):Arabidopsis thalianaAT5G11160.1
ORTHOMCL2406(14 genes,8 taxa):Brassica oleraceaBol021434
ORTHOMCL2406(14 genes,8 taxa):Brassica oleraceaBol024697
ORTHOMCL2406(14 genes,8 taxa):Brassica rapaBra003547
ORTHOMCL2406(14 genes,8 taxa):Brassica rapaBra023310
ORTHOMCL2406(14 genes,8 taxa):Vitis viniferaGSVIVT01017349001
ORTHOMCL2406(14 genes,8 taxa):Oryza sativaOs02t0613900-01
ORTHOMCL2406(14 genes,8 taxa):Oryza sativaOs02t0613900-02
ORTHOMCL2406(14 genes,8 taxa):Populus trichocarpaPOPTR_0006s27200.1
ORTHOMCL2406(14 genes,8 taxa):Populus trichocarpaPOPTR_0018s01860.1
ORTHOMCL2406(14 genes,8 taxa):Sorghum bicolorSb04g025930.1
ORTHOMCL2406(14 genes,8 taxa):Sorghum bicolorSb06g021810.1
ORTHOMCL2406(14 genes,8 taxa):Carica papayaevm.TU.supercontig_217.12
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:30044554..31249584 (+)A.thalianaChr1:5306061..5791534 (+)37
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:30006576..31362465 (+)B.rapaA07:21958866..22695233 (-)70
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
EAT1G800503011151430113324Chr1Subgenome_II331
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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