Basic Information
Gene Model:Bol021386
Gene Family:Transcription Factor Families
Chromosome:C02
Scaffold:Scaffold000116
Sequence:
 | 
Gene Structure
Nucleotide Length:1485 bp
Transcript Length:1026 bp
Protein Length:341 aa
Strand:-
Location:C02: 4543317 : 4544801
Gene CDSs(4): 1-363 | 443-711 | 807-1101 | 1387-1485 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Coilcoilcoiled-coil 161 182 NANot foundNot found
HMMPfamPF02362B3 208 301 5.6e-12IPR003340Transcriptional factor B3
HMMPfamPF02362B3 18 116 2.3e-22IPR003340Transcriptional factor B3
Segsegseg 299 341 NANot foundNot found
Segsegseg 39 50 NANot foundNot found
Segsegseg 146 162 NANot foundNot found
Segsegseg 175 192 NANot foundNot found
Gene3DG3DSA:2.40.330.10no description 9 116 6.8e-22Not foundNot found
ProfileScanPS50863B3 19 114 13.169IPR003340Transcriptional factor B3
ProfileScanPS50863B3 206 299 10.842IPR003340Transcriptional factor B3
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q9FJG21e-106Y5800_ARATH B3 domain-containing protein At5g18000 OS=Arabidopsis thaliana GN=At5g18000 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q3E8F61e-23Q3E8F6_ARATH Putative uncharacterized protein At5g46915.1 OS=Arabidopsis thaliana GN=At5g46915 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL13116(6 genes,3 taxa):Arabidopsis thalianaAT5G18000.1
ORTHOMCL13116(6 genes,3 taxa):Arabidopsis thalianaAT5G18090.1
ORTHOMCL13116(6 genes,3 taxa):Brassica oleraceaBol019747
ORTHOMCL13116(6 genes,3 taxa):Brassica oleraceaBol021386
ORTHOMCL13116(6 genes,3 taxa):Brassica rapaBra002132
ORTHOMCL13116(6 genes,3 taxa):Brassica rapaBra023652
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:3260082..5447020 (+)A.thalianaChr5:4729319..6673282 (+)218
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:4322905..10141266 (+)B.rapaA10:6145708..10195845 (+)263
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
RAT5G1800059599005961642Chr5Subgenome_I556
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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