| Basic Information |
| Gene Model: | Bol021386 |
| Gene Family: | Transcription Factor Families |
| Chromosome: | C02 |
| Scaffold: | Scaffold000116 |
| Sequence: | |
| Gene Structure |
|
| Nucleotide Length: | 1485 bp |
| Transcript Length: | 1026 bp |
| Protein Length: | 341 aa |
| Strand: | - |
| Location: | C02: 4543317 : 4544801 |
| Gene CDSs(4): | 1-363 | 443-711 | 807-1101 | 1387-1485 | |
| Protein Sequence Features |
| Interpro |
 |
| Database | Terms | Identifier | Start | End | E-value | InterPro ID | Description | | Coil | coil | coiled-coil |
161 |
182 |
NA | Not found | Not found | | HMMPfam | PF02362 | B3 |
208 |
301 |
5.6e-12 | IPR003340 | Transcriptional factor B3 | | HMMPfam | PF02362 | B3 |
18 |
116 |
2.3e-22 | IPR003340 | Transcriptional factor B3 | | Seg | seg | seg |
299 |
341 |
NA | Not found | Not found | | Seg | seg | seg |
39 |
50 |
NA | Not found | Not found | | Seg | seg | seg |
146 |
162 |
NA | Not found | Not found | | Seg | seg | seg |
175 |
192 |
NA | Not found | Not found | | Gene3D | G3DSA:2.40.330.10 | no description |
9 |
116 |
6.8e-22 | Not found | Not found | | ProfileScan | PS50863 | B3 |
19 |
114 |
13.169 | IPR003340 | Transcriptional factor B3 | | ProfileScan | PS50863 | B3 |
206 |
299 |
10.842 | IPR003340 | Transcriptional factor B3 | |
| Gene Ontology |
| GO Term | GO Type | Description |
| GO:0003677 |
Molecular Function |
DNA binding | | GO:0006355 |
Biological Process |
regulation of transcription, DNA-dependent |
|
| Swiss-Prot |
| Best Hit | E_value |
Description | | Q9FJG2 | 1e-106 | Y5800_ARATH B3 domain-containing protein At5g18000 OS=Arabidopsis thaliana GN=At5g18000 PE=2 SV=1 |
|
| TrEMBL |
| Best Hit | E_value |
Description | | Q3E8F6 | 1e-23 | Q3E8F6_ARATH Putative uncharacterized protein At5g46915.1 OS=Arabidopsis thaliana GN=At5g46915 PE=4 SV=1 |
|
| KEGG |
| Best Hit | E_value | KO | EC or Symbol |
Description | Note: this gene was not detected its best hit in KEGG database. |
|
| Gene Cluster |
| Orthologs |
| OrthoMCL Group | Species | Gene List | | ORTHOMCL13116(6 genes,3 taxa): | Arabidopsis thaliana | AT5G18000.1 | | ORTHOMCL13116(6 genes,3 taxa): | Arabidopsis thaliana | AT5G18090.1 | | ORTHOMCL13116(6 genes,3 taxa): | Brassica oleracea | Bol019747 | | ORTHOMCL13116(6 genes,3 taxa): | Brassica oleracea | Bol021386 | | ORTHOMCL13116(6 genes,3 taxa): | Brassica rapa | Bra002132 | | ORTHOMCL13116(6 genes,3 taxa): | Brassica rapa | Bra023652 |
|
| Tandem Duplication |
| Cluster | Gene Num. | Gene List | The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase. |
|
| Synteny Analysis |
| Synteny Genes |
| Compared to A.thaliana |
Compared to B.rapa |
| Synteny Regions |
|
|
| Trplicated Block |
| Block | Best Hit | Start | END | Chromosome | Subgenome | Num. of Gene Pairs on Block | | R | AT5G18000 | 5959900 | 5961642 | Chr5 | Subgenome_I | 556 | |
|
