Basic Information
Gene Model:Bol021338
Gene Family:Not classificated
Chromosome:C02
Scaffold:Scaffold000116
Sequence:
 | 
Gene Structure
Nucleotide Length:1368 bp
Transcript Length:879 bp
Protein Length:292 aa
Strand:-
Location:C02: 4189202 : 4190569
Gene CDSs(3): 1-288 | 680-1051 | 1150-1368 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 4 14 NANot foundNot found
Segsegseg 105 115 NANot foundNot found
Segsegseg 266 277 NANot foundNot found
HMMPfamPF00153Mito_carr 199 289 3e-25IPR018108Mitochondrial substrate/solute carrier
HMMPfamPF00153Mito_carr 99 195 5.6e-25IPR018108Mitochondrial substrate/solute carrier
HMMPfamPF00153Mito_carr 1 91 3.2e-27IPR018108Mitochondrial substrate/solute carrier
ProfileScanPS50920SOLCAR 198 284 19.638IPR018108Mitochondrial substrate/solute carrier
ProfileScanPS50920SOLCAR 1 86 19.595IPR018108Mitochondrial substrate/solute carrier
ProfileScanPS50920SOLCAR 98 190 22.170IPR018108Mitochondrial substrate/solute carrier
superfamilySSF103506Mitochondrial carrie 1 281 9.4e-71IPR001993Mitochondrial substrate carrier
HMMPantherPTHR11896MITOCHONDRIAL CARRIE 1 290 6.5e-154IPR001993Mitochondrial substrate carrier
HMMPantherPTHR11896:SF35ADP,ATP CARRIER PROT 1 290 6.5e-154Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0005488 Molecular Function binding
GO:0006810 Biological Process transport
GO:0016020 Cellular Component membrane
GO:0055085 Biological Process transmembrane transport
Swiss-Prot
Best HitE_value Description
P270801e-103ADT_CHLRE ADP,ATP carrier protein OS=Chlamydomonas reinhardtii GN=ABT PE=2 SV=1
TrEMBL
Best HitE_value Description
Q8LB081e-153Q8LB08_ARATH ADP/ATP translocase-like protein OS=Arabidopsis thaliana PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
pop:POPTR_8233131e-140K05863ANTsolute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator)
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL6696(10 genes,8 taxa):Arabidopsis thalianaAT5G17400.1
ORTHOMCL6696(10 genes,8 taxa):Brassica oleraceaBol019805
ORTHOMCL6696(10 genes,8 taxa):Brassica oleraceaBol021338
ORTHOMCL6696(10 genes,8 taxa):Brassica rapaBra013981
ORTHOMCL6696(10 genes,8 taxa):Brassica rapaBra023616
ORTHOMCL6696(10 genes,8 taxa):Vitis viniferaGSVIVT01008142001
ORTHOMCL6696(10 genes,8 taxa):Oryza sativaOs11t0661300-01
ORTHOMCL6696(10 genes,8 taxa):Populus trichocarpaPOPTR_0012s05990.1
ORTHOMCL6696(10 genes,8 taxa):Sorghum bicolorSb04g008410.1
ORTHOMCL6696(10 genes,8 taxa):Carica papayaevm.TU.supercontig_3.248
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:3260082..5447020 (+)A.thalianaChr5:4729319..6673282 (+)218
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:3296103..5395529 (+)B.rapaA03:30118949..31226476 (+)88
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
RAT5G1740057287895730376Chr5Subgenome_I556
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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