Basic Information
Gene Model:Bol021315
Gene Family:Not classificated
Chromosome:C02
Scaffold:Scaffold000116
Sequence:
 | 
Gene Structure
Nucleotide Length:3905 bp
Transcript Length:1509 bp
Protein Length:502 aa
Strand:-
Location:C02: 4049022 : 4052926
Gene CDSs(14): 1-132 | 464-601 | 749-847 | 1016-1096 | 1352-1414 | 1514-1561 | 1637-2005 | 2112-2213 | 2295-2419 | 2517-2583 | 2698-2757 | 3011-3089 | 3495-3592 | 3858-3905 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00083Sugar_tr 49 501 2.2e-92IPR005828General substrate transporter
ProfileScanPS50850MFS 49 490 48.512Not foundNot found
HMMPantherPTHR11600SUGAR TRANSPORTER 6 370 4.7e-237Not foundNot found
HMMTigrTIGR00879SP: MFS transporter, 1 497 3.3e-76IPR003663Sugar/inositol transporter
HMMPantherPTHR11600:SF83SUGAR TRANSPORTER 6 370 4.7e-237Not foundNot found
superfamilySSF103473MFS general substrat 20 498 5.3e-62IPR016196Major facilitator superfamily, general substrate transporter
Segsegseg 396 407 NANot foundNot found
Segsegseg 123 136 NANot foundNot found
Segsegseg 366 388 NANot foundNot found
Segsegseg 55 62 NANot foundNot found
PatternScanPS00216SUGAR_TRANSPORT_1 360 376 NAIPR005829Sugar transporter, conserved site
Gene Ontology
GO TermGO TypeDescription
GO:0005215 Molecular Function transporter activity
GO:0006810 Biological Process transport
GO:0016020 Cellular Component membrane
GO:0016021 Cellular Component integral to membrane
GO:0022891 Molecular Function substrate-specific transmembrane transporter activity
GO:0055085 Biological Process transmembrane transport
Swiss-Prot
Best HitE_value Description
Q6AWX00.0XYLL2_ARATH D-xylose-proton symporter-like 2 OS=Arabidopsis thaliana GN=At5g17010 PE=1 SV=1
TrEMBL
Best HitE_value Description
A9PFB90.0A9PFB9_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
tad:TRIADDRAFT_580683e-54K08149SLC2A12, GLUT12MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 12
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL3052(13 genes,7 taxa):Arabidopsis thalianaAT3G03090.1
ORTHOMCL3052(13 genes,7 taxa):Arabidopsis thalianaAT5G17010.1
ORTHOMCL3052(13 genes,7 taxa):Brassica oleraceaBol000835
ORTHOMCL3052(13 genes,7 taxa):Brassica oleraceaBol002245
ORTHOMCL3052(13 genes,7 taxa):Brassica oleraceaBol003798
ORTHOMCL3052(13 genes,7 taxa):Brassica oleraceaBol021315
ORTHOMCL3052(13 genes,7 taxa):Brassica rapaBra021374
ORTHOMCL3052(13 genes,7 taxa):Brassica rapaBra023592
ORTHOMCL3052(13 genes,7 taxa):Brassica rapaBra032018
ORTHOMCL3052(13 genes,7 taxa):Vitis viniferaGSVIVT01024413001
ORTHOMCL3052(13 genes,7 taxa):Oryza sativaOs10t0579200-01
ORTHOMCL3052(13 genes,7 taxa):Populus trichocarpaPOPTR_0019s08330.1
ORTHOMCL3052(13 genes,7 taxa):Sorghum bicolorSb01g027800.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:3260082..5447020 (+)A.thalianaChr5:4729319..6673282 (+)218
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:3260082..4171696 (+)B.rapaA10:10299..881157 (-)82
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
RAT5G1701055873515592446Chr5Subgenome_I556
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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