Basic Information
Gene Model:Bol021288
Gene Family:Not classificated
Chromosome:C02
Scaffold:Scaffold000116
Sequence:
 | 
Gene Structure
Nucleotide Length:1175 bp
Transcript Length:633 bp
Protein Length:210 aa
Strand:-
Location:C02: 3882762 : 3883936
Gene CDSs(5): 1-270 | 350-393 | 485-542 | 783-876 | 1009-1175 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF03162Y_phosphatase2 20 178 1.3e-61IPR004861Protein-tyrosine phosphatase, SIW14-like
Segsegseg 8 18 NANot foundNot found
superfamilySSF52799(Phosphotyrosine pro 4 172 4.5e-26Not foundNot found
PatternScanPS00383TYR_PHOSPHATASE_1 115 125 NAIPR016130Protein-tyrosine phosphatase, active site
Gene3DG3DSA:3.90.190.10no description 19 169 3.6e-52Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0004725 Molecular Function protein tyrosine phosphatase activity
GO:0016311 Biological Process dephosphorylation
GO:0016791 Molecular Function phosphatase activity
Swiss-Prot
Best HitE_value Description
Q9ZVN44e-51Y1500_ARATH Probable tyrosine-protein phosphatase At1g05000 OS=Arabidopsis thaliana GN=At1g05000 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q8LDU61e-101Q8LDU6_ARATH Putative uncharacterized protein OS=Arabidopsis thaliana PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL25386(2 genes,2 taxa):Brassica oleraceaBol021288
ORTHOMCL25386(2 genes,2 taxa):Brassica rapaBra023569
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:3260082..5447020 (+)A.thalianaChr5:4729319..6673282 (+)218
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:3260082..4171696 (+)B.rapaA10:10299..881157 (-)82
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
RAT5G1648053811135382897Chr5Subgenome_I556
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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