Basic Information
Gene Model:Bol021255
Gene Family:Transcription Factor Families
Chromosome:C02
Scaffold:Scaffold000116
Sequence:
 | 
Gene Structure
Nucleotide Length:585 bp
Transcript Length:585 bp
Protein Length:194 aa
Strand:+
Location:C02: 3683226 : 3683810
Gene CDSs(1): 1-585 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50217BZIP 72 120 10.542IPR004827Basic-leucine zipper (bZIP) transcription factor
BlastProDomPD136566Q6FUN3_CANGA_Q6FUN3; 57 178 7e-05Not foundNot found
HMMPantherPTHR22952:SF10CYCLIC-AMP-DEPENDENT 58 116 3.6e-05Not foundNot found
HMMPantherPTHR22952CAMP-RESPONSE ELEMEN 58 116 3.6e-05Not foundNot found
Segsegseg 20 41 NANot foundNot found
HMMSmartSM00338no description 70 134 3.2e-12IPR004827Basic-leucine zipper (bZIP) transcription factor
PatternScanPS00036BZIP_BASIC 77 92 NAIPR004827Basic-leucine zipper (bZIP) transcription factor
HMMPfamPF00170bZIP_1 72 133 6.3e-11IPR011616bZIP transcription factor, bZIP-1
Coilcoilcoiled-coil 97 118 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
GO:0043565 Molecular Function sequence-specific DNA binding
GO:0046983 Molecular Function protein dimerization activity
Swiss-Prot
Best HitE_value Description
P240684e-08OCS1_MAIZE Ocs element-binding factor 1 OS=Zea mays GN=OBF1 PE=2 SV=2
TrEMBL
Best HitE_value Description
Q9LFU31e-68Q9LFU3_ARATH BZIP DNA-binding protein-like OS=Arabidopsis thaliana GN=F14F8_210 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
vvi:1002540834e-12K04371ERK1_2extracellular signal-regulated kinase 1/2
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL19240(3 genes,3 taxa):Arabidopsis thalianaAT5G15830.1
ORTHOMCL19240(3 genes,3 taxa):Brassica oleraceaBol021255
ORTHOMCL19240(3 genes,3 taxa):Brassica rapaBra023540
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:3260082..5447020 (+)A.thalianaChr5:4729319..6673282 (+)218
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:3260082..4171696 (+)B.rapaA10:10299..881157 (-)82
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
RAT5G1583051685435169361Chr5Subgenome_I556
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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