Basic Information
Gene Model:Bol021150
Gene Family:Not classificated
Chromosome:C08
Scaffold:Scaffold000117
Sequence:
 | 
Gene Structure
Nucleotide Length:1679 bp
Transcript Length:1062 bp
Protein Length:353 aa
Strand:+
Location:C08: 15788569 : 15790247
Gene CDSs(4): 1-181 | 265-780 | 849-1034 | 1501-1679 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF103481Multidrug resistance 42 156 1.4e-06Not foundNot found
superfamilySSF103481Multidrug resistance 206 317 7.3e-11Not foundNot found
Segsegseg 291 307 NANot foundNot found
HMMPfamPF00892DUF6 181 310 4.4e-09IPR000620Protein of unknown function DUF6, transmembrane
HMMPfamPF00892DUF6 17 151 1.2e-08IPR000620Protein of unknown function DUF6, transmembrane
Gene Ontology
GO TermGO TypeDescription
GO:0016020 Cellular Component membrane
Swiss-Prot
Best HitE_value Description
Q6J1633e-515NG4_PINTA Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1
TrEMBL
Best HitE_value Description
Q9SUD51e-168Q9SUD5_ARATH AT4G28040 protein OS=Arabidopsis thaliana GN=T13J8.150 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List

Note: the orthologous genes of this gene was not detected by OrthoMCL software with default parameters.

Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:15574424..16443660 (+)A.thalianaChr4:13870382..14370892 (+)47
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:15368513..16443660 (+)B.rapaA08:4721046..5216348 (-)58
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
UAT4G280401394035913942436Chr4Subgenome_II78
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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