Basic Information
Gene Model:Bol021079
Gene Family:Not classificated
Chromosome:C08
Scaffold:Scaffold000117
Sequence:
 | 
Gene Structure
Nucleotide Length:912 bp
Transcript Length:912 bp
Protein Length:303 aa
Strand:-
Location:C08: 16675718 : 16676629
Gene CDSs(1): 1-912 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 280 297 NANot foundNot found
Coilcoilcoiled-coil 131 156 NANot foundNot found
Coilcoilcoiled-coil 97 121 NANot foundNot found
HMMPfamPF05739SNARE 210 272 5.3e-23IPR000727Target SNARE coiled-coil region
HMMPfamPF00804Syntaxin 38 142 1.7e-20IPR006011Syntaxin, N-terminal
superfamilySSF47661t-snare proteins 36 260 4.6e-45IPR010989t-SNARE
Gene3DG3DSA:1.20.1050.30no description 36 260 1.3e-48Not foundNot found
ProfileScanPS50192T_SNARE 205 267 17.425IPR000727Target SNARE coiled-coil region
PatternScanPS00914SYNTAXIN 211 251 NAIPR006012Syntaxin/epimorphin, conserved site
HMMSmartSM00503no description 34 157 2.7e-34IPR006011Syntaxin, N-terminal
HMMSmartSM00397no description 200 267 6.8e-18IPR000727Target SNARE coiled-coil region
HMMPantherPTHR19957SYNTAXIN 28 235 9.7e-91Not foundNot found
HMMPantherPTHR19957:SF26SYNTAXIN, ARABIDOPSI 28 235 9.7e-91Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0005484 Molecular Function SNAP receptor activity
GO:0005515 Molecular Function protein binding
GO:0006886 Biological Process intracellular protein transport
GO:0016020 Cellular Component membrane
GO:0016192 Biological Process vesicle-mediated transport
Swiss-Prot
Best HitE_value Description
Q423741e-133SY111_ARATH Syntaxin-related protein KNOLLE OS=Arabidopsis thaliana GN=KN PE=1 SV=1
TrEMBL
Best HitE_value Description
A7P5131e-118A7P513_VITVI Chromosome chr4 scaffold_6, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00032360001 PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G085601e-132K08486STX1B_2_3syntaxin 1B/2/3
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL25366(2 genes,2 taxa):Brassica oleraceaBol021079
ORTHOMCL25366(2 genes,2 taxa):Brassica rapaBra030733
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:16527338..18299207 (+)A.thalianaChr1:2646189..3698013 (+)124
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:16527338..17222475 (+)B.rapaA09:1597513..1754984 (+)18
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
AAT1G0856027096322710912Chr1Subgenome_II291
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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