Basic Information
Gene Model:Bol020960
Gene Family:Protein Kinase Gene Families
Chromosome:C01
Scaffold:Scaffold000118_P1
Sequence:
 | 
Gene Structure
Nucleotide Length:3377 bp
Transcript Length:2211 bp
Protein Length:736 aa
Strand:+
Location:C01: 4604822 : 4608198
Gene CDSs(10): 1-403 | 488-740 | 819-945 | 1142-1535 | 1617-1697 | 1793-1864 | 1949-2020 | 2128-2272 | 2351-2823 | 3187-3377 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00069Pkinase 433 631 2.1e-45IPR017442Serine/threonine-protein kinase-like domain
HMMPfamPF00560LRR_1 314 337 0.0077IPR001611Leucine-rich repeat
HMMPfamPF00560LRR_1 290 312 0.012IPR001611Leucine-rich repeat
superfamilySSF52058L domain-like 239 336 9.5e-17Not foundNot found
superfamilySSF56112Protein kinase-like 405 701 2.6e-78IPR011009Protein kinase-like domain
HMMSmartSM00220no description 433 706 4.2e-33IPR002290Serine/threonine-protein kinase domain
HMMSmartSM00219no description 433 701 8.9e-34IPR020635Tyrosine-protein kinase, subgroup, catalytic domain
Segsegseg 225 237 NANot foundNot found
Segsegseg 309 320 NANot foundNot found
Segsegseg 373 389 NANot foundNot found
Gene3DG3DSA:1.10.510.10no description 510 703 5.1e-51Not foundNot found
Gene3DG3DSA:3.30.200.20no description 414 507 1.9e-20Not foundNot found
Gene3DG3DSA:3.80.10.10no description 215 333 7e-17Not foundNot found
PatternScanPS00107PROTEIN_KINASE_ATP 439 460 NAIPR017441Protein kinase, ATP binding site
PatternScanPS00108PROTEIN_KINASE_ST 552 564 NAIPR008271Serine/threonine-protein kinase, active site
ProfileScanPS50011PROTEIN_KINASE_DOM 433 706 40.032IPR000719Protein kinase, catalytic domain
HMMPantherPTHR23258SERINE-THREONINE PRO 237 736 2.1e-238Not foundNot found
HMMPantherPTHR23258:SF417RECEPTOR-LIKE PROTEI 237 736 2.1e-238Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0004672 Molecular Function protein kinase activity
GO:0004674 Molecular Function protein serine/threonine kinase activity
GO:0005515 Molecular Function protein binding
GO:0005524 Molecular Function ATP binding
GO:0006468 Biological Process protein phosphorylation
Swiss-Prot
Best HitE_value Description
O644830.0SIRK_ARATH Senescence-induced receptor-like serine/threonine-protein kinase OS=Arabidopsis thaliana GN=SIRK PE=2 SV=1
TrEMBL
Best HitE_value Description
Q391430.0Q39143_ARATH Light repressible receptor protein kinase OS=Arabidopsis thaliana GN=lrrpk PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G284401e-63K00924E2.7.1.---
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL18(144 genes,8 taxa):Arabidopsis thalianaAT1G05700.1
ORTHOMCL18(144 genes,8 taxa):Arabidopsis thalianaAT1G07550.1
ORTHOMCL18(144 genes,8 taxa):Arabidopsis thalianaAT1G07560.1
ORTHOMCL18(144 genes,8 taxa):Arabidopsis thalianaAT1G49100.1
ORTHOMCL18(144 genes,8 taxa):Arabidopsis thalianaAT1G51790.1
ORTHOMCL18(144 genes,8 taxa):Arabidopsis thalianaAT1G51800.1
ORTHOMCL18(144 genes,8 taxa):Arabidopsis thalianaAT1G51805.1
ORTHOMCL18(144 genes,8 taxa):Arabidopsis thalianaAT1G51810.1
ORTHOMCL18(144 genes,8 taxa):Arabidopsis thalianaAT1G51820.1
ORTHOMCL18(144 genes,8 taxa):Arabidopsis thalianaAT1G51830.1
ORTHOMCL18(144 genes,8 taxa):Arabidopsis thalianaAT1G51850.1
ORTHOMCL18(144 genes,8 taxa):Arabidopsis thalianaAT1G51860.1
ORTHOMCL18(144 genes,8 taxa):Arabidopsis thalianaAT1G51870.1
ORTHOMCL18(144 genes,8 taxa):Arabidopsis thalianaAT1G51880.1
ORTHOMCL18(144 genes,8 taxa):Arabidopsis thalianaAT1G51890.1
ORTHOMCL18(144 genes,8 taxa):Arabidopsis thalianaAT1G51910.1
ORTHOMCL18(144 genes,8 taxa):Arabidopsis thalianaAT2G04300.1
ORTHOMCL18(144 genes,8 taxa):Arabidopsis thalianaAT2G14440.1
ORTHOMCL18(144 genes,8 taxa):Arabidopsis thalianaAT2G14510.1
ORTHOMCL18(144 genes,8 taxa):Arabidopsis thalianaAT2G19190.1
ORTHOMCL18(144 genes,8 taxa):Arabidopsis thalianaAT2G19210.1
ORTHOMCL18(144 genes,8 taxa):Arabidopsis thalianaAT2G19230.1
ORTHOMCL18(144 genes,8 taxa):Arabidopsis thalianaAT2G28960.1
ORTHOMCL18(144 genes,8 taxa):Arabidopsis thalianaAT2G28970.1
ORTHOMCL18(144 genes,8 taxa):Arabidopsis thalianaAT2G28990.1
ORTHOMCL18(144 genes,8 taxa):Arabidopsis thalianaAT2G29000.1
ORTHOMCL18(144 genes,8 taxa):Arabidopsis thalianaAT3G21340.1
ORTHOMCL18(144 genes,8 taxa):Arabidopsis thalianaAT3G46330.1
ORTHOMCL18(144 genes,8 taxa):Arabidopsis thalianaAT3G46340.1
ORTHOMCL18(144 genes,8 taxa):Arabidopsis thalianaAT3G46350.1
ORTHOMCL18(144 genes,8 taxa):Arabidopsis thalianaAT3G46370.1
ORTHOMCL18(144 genes,8 taxa):Arabidopsis thalianaAT3G46400.1
ORTHOMCL18(144 genes,8 taxa):Arabidopsis thalianaAT3G46420.1
ORTHOMCL18(144 genes,8 taxa):Arabidopsis thalianaAT4G20450.1
ORTHOMCL18(144 genes,8 taxa):Arabidopsis thalianaAT4G29180.1
ORTHOMCL18(144 genes,8 taxa):Arabidopsis thalianaAT4G29450.1
ORTHOMCL18(144 genes,8 taxa):Arabidopsis thalianaAT4G29990.1
ORTHOMCL18(144 genes,8 taxa):Arabidopsis thalianaAT5G16900.1
ORTHOMCL18(144 genes,8 taxa):Arabidopsis thalianaAT5G59650.1
ORTHOMCL18(144 genes,8 taxa):Arabidopsis thalianaAT5G59660.1
ORTHOMCL18(144 genes,8 taxa):Arabidopsis thalianaAT5G59670.1
ORTHOMCL18(144 genes,8 taxa):Arabidopsis thalianaAT5G59680.1
ORTHOMCL18(144 genes,8 taxa):Brassica oleraceaBol003302
ORTHOMCL18(144 genes,8 taxa):Brassica oleraceaBol003303
ORTHOMCL18(144 genes,8 taxa):Brassica oleraceaBol009270
ORTHOMCL18(144 genes,8 taxa):Brassica oleraceaBol009276
ORTHOMCL18(144 genes,8 taxa):Brassica oleraceaBol019575
ORTHOMCL18(144 genes,8 taxa):Brassica oleraceaBol020960
ORTHOMCL18(144 genes,8 taxa):Brassica oleraceaBol023314
ORTHOMCL18(144 genes,8 taxa):Brassica oleraceaBol026616
ORTHOMCL18(144 genes,8 taxa):Brassica oleraceaBol026802
ORTHOMCL18(144 genes,8 taxa):Brassica oleraceaBol031572
ORTHOMCL18(144 genes,8 taxa):Brassica oleraceaBol031573
ORTHOMCL18(144 genes,8 taxa):Brassica oleraceaBol033577
ORTHOMCL18(144 genes,8 taxa):Brassica oleraceaBol041013
ORTHOMCL18(144 genes,8 taxa):Brassica oleraceaBol041014
ORTHOMCL18(144 genes,8 taxa):Brassica rapaBra001827
ORTHOMCL18(144 genes,8 taxa):Brassica rapaBra006700
ORTHOMCL18(144 genes,8 taxa):Brassica rapaBra011111
ORTHOMCL18(144 genes,8 taxa):Brassica rapaBra011156
ORTHOMCL18(144 genes,8 taxa):Brassica rapaBra012169
ORTHOMCL18(144 genes,8 taxa):Brassica rapaBra012171
ORTHOMCL18(144 genes,8 taxa):Brassica rapaBra015449
ORTHOMCL18(144 genes,8 taxa):Brassica rapaBra015587
ORTHOMCL18(144 genes,8 taxa):Brassica rapaBra018213
ORTHOMCL18(144 genes,8 taxa):Brassica rapaBra018933
ORTHOMCL18(144 genes,8 taxa):Brassica rapaBra018934
ORTHOMCL18(144 genes,8 taxa):Brassica rapaBra018935
ORTHOMCL18(144 genes,8 taxa):Brassica rapaBra018936
ORTHOMCL18(144 genes,8 taxa):Brassica rapaBra019608
ORTHOMCL18(144 genes,8 taxa):Brassica rapaBra020298
ORTHOMCL18(144 genes,8 taxa):Brassica rapaBra020299
ORTHOMCL18(144 genes,8 taxa):Brassica rapaBra020300
ORTHOMCL18(144 genes,8 taxa):Brassica rapaBra020301
ORTHOMCL18(144 genes,8 taxa):Brassica rapaBra020303
ORTHOMCL18(144 genes,8 taxa):Brassica rapaBra020304
ORTHOMCL18(144 genes,8 taxa):Brassica rapaBra020918
ORTHOMCL18(144 genes,8 taxa):Brassica rapaBra021250
ORTHOMCL18(144 genes,8 taxa):Brassica rapaBra021253
ORTHOMCL18(144 genes,8 taxa):Brassica rapaBra024158
ORTHOMCL18(144 genes,8 taxa):Brassica rapaBra028386
ORTHOMCL18(144 genes,8 taxa):Brassica rapaBra030411
ORTHOMCL18(144 genes,8 taxa):Brassica rapaBra030412
ORTHOMCL18(144 genes,8 taxa):Brassica rapaBra030414
ORTHOMCL18(144 genes,8 taxa):Brassica rapaBra030416
ORTHOMCL18(144 genes,8 taxa):Brassica rapaBra030417
ORTHOMCL18(144 genes,8 taxa):Brassica rapaBra030622
ORTHOMCL18(144 genes,8 taxa):Brassica rapaBra031276
ORTHOMCL18(144 genes,8 taxa):Brassica rapaBra031584
ORTHOMCL18(144 genes,8 taxa):Brassica rapaBra033825
ORTHOMCL18(144 genes,8 taxa):Brassica rapaBra035231
ORTHOMCL18(144 genes,8 taxa):Brassica rapaBra035657
ORTHOMCL18(144 genes,8 taxa):Vitis viniferaGSVIVT01016915001
ORTHOMCL18(144 genes,8 taxa):Vitis viniferaGSVIVT01016917001
ORTHOMCL18(144 genes,8 taxa):Vitis viniferaGSVIVT01016918001
ORTHOMCL18(144 genes,8 taxa):Vitis viniferaGSVIVT01016919001
ORTHOMCL18(144 genes,8 taxa):Vitis viniferaGSVIVT01016922001
ORTHOMCL18(144 genes,8 taxa):Vitis viniferaGSVIVT01016925001
ORTHOMCL18(144 genes,8 taxa):Vitis viniferaGSVIVT01016933001
ORTHOMCL18(144 genes,8 taxa):Vitis viniferaGSVIVT01016934001
ORTHOMCL18(144 genes,8 taxa):Vitis viniferaGSVIVT01016936001
ORTHOMCL18(144 genes,8 taxa):Vitis viniferaGSVIVT01016937001
ORTHOMCL18(144 genes,8 taxa):Vitis viniferaGSVIVT01016939001
ORTHOMCL18(144 genes,8 taxa):Vitis viniferaGSVIVT01016943001
ORTHOMCL18(144 genes,8 taxa):Vitis viniferaGSVIVT01016948001
ORTHOMCL18(144 genes,8 taxa):Oryza sativaOs01t0124500-00
ORTHOMCL18(144 genes,8 taxa):Oryza sativaOs01t0810500-00
ORTHOMCL18(144 genes,8 taxa):Oryza sativaOs01t0810800-01
ORTHOMCL18(144 genes,8 taxa):Oryza sativaOs02t0151100-01
ORTHOMCL18(144 genes,8 taxa):Oryza sativaOs05t0524500-01
ORTHOMCL18(144 genes,8 taxa):Oryza sativaOs05t0524600-00
ORTHOMCL18(144 genes,8 taxa):Oryza sativaOs05t0525000-00
ORTHOMCL18(144 genes,8 taxa):Oryza sativaOs05t0525400-00
ORTHOMCL18(144 genes,8 taxa):Oryza sativaOs05t0525800-00
ORTHOMCL18(144 genes,8 taxa):Oryza sativaOs09t0265500-00
ORTHOMCL18(144 genes,8 taxa):Oryza sativaOs09t0355400-01
ORTHOMCL18(144 genes,8 taxa):Oryza sativaOs12t0567500-00
ORTHOMCL18(144 genes,8 taxa):Populus trichocarpaPOPTR_0019s12400.1
ORTHOMCL18(144 genes,8 taxa):Populus trichocarpaPOPTR_0019s12400.2
ORTHOMCL18(144 genes,8 taxa):Populus trichocarpaPOPTR_0019s12400.3
ORTHOMCL18(144 genes,8 taxa):Populus trichocarpaPOPTR_0019s12420.1
ORTHOMCL18(144 genes,8 taxa):Populus trichocarpaPOPTR_0019s12440.1
ORTHOMCL18(144 genes,8 taxa):Populus trichocarpaPOPTR_0019s12850.1
ORTHOMCL18(144 genes,8 taxa):Populus trichocarpaPOPTR_0019s12860.1
ORTHOMCL18(144 genes,8 taxa):Populus trichocarpaPOPTR_0019s12860.2
ORTHOMCL18(144 genes,8 taxa):Populus trichocarpaPOPTR_0086s00230.1
ORTHOMCL18(144 genes,8 taxa):Populus trichocarpaPOPTR_0086s00270.1
ORTHOMCL18(144 genes,8 taxa):Populus trichocarpaPOPTR_0104s00200.1
ORTHOMCL18(144 genes,8 taxa):Populus trichocarpaPOPTR_0104s00200.2
ORTHOMCL18(144 genes,8 taxa):Populus trichocarpaPOPTR_0104s00230.1
ORTHOMCL18(144 genes,8 taxa):Populus trichocarpaPOPTR_0104s00230.2
ORTHOMCL18(144 genes,8 taxa):Populus trichocarpaPOPTR_0144s00230.1
ORTHOMCL18(144 genes,8 taxa):Populus trichocarpaPOPTR_0144s00240.1
ORTHOMCL18(144 genes,8 taxa):Sorghum bicolorSb04g003680.1
ORTHOMCL18(144 genes,8 taxa):Sorghum bicolorSb08g018610.1
ORTHOMCL18(144 genes,8 taxa):Sorghum bicolorSb09g023520.1
ORTHOMCL18(144 genes,8 taxa):Sorghum bicolorSb09g026141.1
ORTHOMCL18(144 genes,8 taxa):Sorghum bicolorSb09g026160.1
ORTHOMCL18(144 genes,8 taxa):Sorghum bicolorSb09g026180.1
ORTHOMCL18(144 genes,8 taxa):Carica papayaevm.TU.contig_26718.3
ORTHOMCL18(144 genes,8 taxa):Carica papayaevm.TU.supercontig_131.3
ORTHOMCL18(144 genes,8 taxa):Carica papayaevm.TU.supercontig_131.6
ORTHOMCL18(144 genes,8 taxa):Carica papayaevm.TU.supercontig_131.7
ORTHOMCL18(144 genes,8 taxa):Carica papayaevm.TU.supercontig_48.234
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:4298534..4742390 (-)A.thalianaChr5:23109438..23374469 (+)11
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:3592651..5859156 (+)B.rapaA08:4009191..4992264 (+)87
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
UAT4G299901466569114670030Chr4Subgenome_III(LF)1224
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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