Basic Information
Gene Model:Bol020833
Gene Family:Protein Kinase Gene Families
Chromosome:C02
Scaffold:Scaffold000120
Sequence:
 | 
Gene Structure
Nucleotide Length:4319 bp
Transcript Length:3234 bp
Protein Length:1077 aa
Strand:+
Location:C02: 22914568 : 22918886
Gene CDSs(14): 1-246 | 333-489 | 578-699 | 805-870 | 953-1300 | 1373-1460 | 1532-1839 | 1930-2161 | 2242-2324 | 2396-2458 | 2553-2678 | 2745-2975 | 3061-3192 | 3288-4319 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMSmartSM00220no description 765 1021 2.8e-21IPR002290Serine/threonine-protein kinase domain
HMMSmartSM00100no description 603 739 0.0021IPR000595Cyclic nucleotide-binding
HMMSmartSM00100no description 477 600 7.6e-09IPR000595Cyclic nucleotide-binding
HMMSmartSM00332no description 85 381 8.2e-58IPR001932Protein phosphatase 2C-related
Gene3DG3DSA:1.10.510.10no description 824 1041 2.3e-40Not foundNot found
Gene3DG3DSA:2.60.120.10no description 595 743 8.5e-16IPR014710RmlC-like jelly roll fold
Gene3DG3DSA:2.60.120.10no description 455 586 2.5e-26IPR014710RmlC-like jelly roll fold
Gene3DG3DSA:3.60.40.10no description 71 387 1.2e-51IPR001932Protein phosphatase 2C-related
ProfileScanPS50042CNMP_BINDING_3 603 726 14.541IPR000595Cyclic nucleotide-binding
ProfileScanPS50042CNMP_BINDING_3 477 586 26.045IPR000595Cyclic nucleotide-binding
ProfileScanPS50011PROTEIN_KINASE_DOM 765 1021 26.803IPR000719Protein kinase, catalytic domain
PatternScanPS01032PP2C 129 137 NAIPR000222Protein phosphatase 2C, manganese/magnesium aspartate binding site
HMMPantherPTHR13832PROTEIN PHOSPHATASE 71 391 7.6e-109IPR015655Protein phosphatase 2C
HMMPantherPTHR13832:SF94PROTEIN PHOSPHATASE 71 391 7.6e-109Not foundNot found
HMMPfamPF00069Pkinase 894 1021 1.7e-29IPR017442Serine/threonine-protein kinase-like domain
HMMPfamPF00027cNMP_binding 621 729 7.8e-13IPR000595Cyclic nucleotide-binding
HMMPfamPF00027cNMP_binding 495 590 7.8e-17IPR000595Cyclic nucleotide-binding
HMMPfamPF00481PP2C 122 364 6.8e-30IPR014045Protein phosphatase 2C, N-terminal
Segsegseg 705 714 NANot foundNot found
Segsegseg 749 765 NANot foundNot found
superfamilySSF51206cAMP-binding domain- 596 732 2.4e-17IPR018490Cyclic nucleotide-binding-like
superfamilySSF56112Protein kinase-like 732 1074 7.5e-45IPR011009Protein kinase-like domain
superfamilySSF51206cAMP-binding domain- 455 587 6.5e-28IPR018490Cyclic nucleotide-binding-like
superfamilySSF81606Protein serine/threo 72 388 2.8e-56IPR001932Protein phosphatase 2C-related
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
GO:0004672 Molecular Function protein kinase activity
GO:0004674 Molecular Function protein serine/threonine kinase activity
GO:0004722 Molecular Function protein serine/threonine phosphatase activity
GO:0005524 Molecular Function ATP binding
GO:0006468 Biological Process protein phosphorylation
GO:0006470 Biological Process protein dephosphorylation
GO:0008287 Cellular Component protein serine/threonine phosphatase complex
Swiss-Prot
Best HitE_value Description
Q9SL760.0P2C19_ARATH Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein OS=Arabidopsis thaliana GN=At2g20050 PE=1 SV=2
TrEMBL
Best HitE_value Description
B9RKK90.0B9RKK9_RICCO Protein phosphatase 2c, putative OS=Ricinus communis GN=RCOM_1050860 PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT2G200500.0K04345PKAprotein kinase A
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL9469(8 genes,8 taxa):Arabidopsis thalianaAT2G20050.1
ORTHOMCL9469(8 genes,8 taxa):Brassica oleraceaBol020833
ORTHOMCL9469(8 genes,8 taxa):Brassica rapaBra040822
ORTHOMCL9469(8 genes,8 taxa):Vitis viniferaGSVIVT01015338001
ORTHOMCL9469(8 genes,8 taxa):Oryza sativaOs02t0281000-01
ORTHOMCL9469(8 genes,8 taxa):Populus trichocarpaPOPTR_0018s09190.1
ORTHOMCL9469(8 genes,8 taxa):Sorghum bicolorSb04g011020.1
ORTHOMCL9469(8 genes,8 taxa):Carica papayaevm.TU.supercontig_40.29
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:22774478..23296751 (-)A.thalianaChr2:8581358..8730500 (+)19
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
HAT2G2005086494348654228Chr2Subgenome_III(LF)20
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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