Basic Information
Gene Model:Bol020806
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000121_P2
Sequence:
 | 
Gene Structure
Nucleotide Length:3060 bp
Transcript Length:2064 bp
Protein Length:687 aa
Strand:-
Location:Scaffold000121_P2: 1152030 : 1155089
Gene CDSs(5): 1-201 | 278-664 | 750-1070 | 1150-1491 | 2248-3060 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:3.40.50.300no description 55 369 3.5e-36Not foundNot found
Gene3DG3DSA:3.40.50.300no description 382 613 7.4e-43Not foundNot found
Segsegseg 628 684 NANot foundNot found
Segsegseg 384 398 NANot foundNot found
Segsegseg 269 279 NANot foundNot found
Segsegseg 76 93 NANot foundNot found
Coilcoilcoiled-coil 624 646 NANot foundNot found
Coilcoilcoiled-coil 647 677 NANot foundNot found
HMMPfamPF00005ABC_tran 445 611 6.2e-53IPR003439ABC transporter-like
HMMPfamPF00005ABC_tran 118 327 2.6e-44IPR003439ABC transporter-like
HMMSmartSM00382no description 444 612 5.3e-13IPR003593ATPase, AAA+ type, core
HMMSmartSM00382no description 117 332 7.6e-09IPR003593ATPase, AAA+ type, core
superfamilySSF52540P-loop containing nu 422 621 3.7e-50Not foundNot found
superfamilySSF52540P-loop containing nu 95 338 1.4e-50Not foundNot found
ProfileScanPS50893ABC_TRANSPORTER_2 420 635 18.708IPR003439ABC transporter-like
ProfileScanPS50893ABC_TRANSPORTER_2 93 351 18.888IPR003439ABC transporter-like
PatternScanPS00589PTS_HPR_SER 411 426 NAIPR002114Phosphotransferase system, HPr serine phosphorylation site
PatternScanPS00211ABC_TRANSPORTER_1 539 553 NAIPR017871ABC transporter, conserved site
PatternScanPS00211ABC_TRANSPORTER_1 255 269 NAIPR017871ABC transporter, conserved site
HMMPantherPTHR19211ATP-BINDING TRANSPOR 225 678 2.6e-251Not foundNot found
HMMPantherPTHR19211:SF11ABC TRANSPORTER (ATP 225 678 2.6e-251Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0000166 Molecular Function nucleotide binding
GO:0005351 Molecular Function sugar:hydrogen symporter activity
GO:0005524 Molecular Function ATP binding
GO:0009401 Biological Process phosphoenolpyruvate-dependent sugar phosphotransferase system
GO:0016887 Molecular Function ATPase activity
GO:0017111 Molecular Function nucleoside-triphosphatase activity
Swiss-Prot
Best HitE_value Description
Q9LV930.0AB5F_ARATH ABC transporter F family member 5 OS=Arabidopsis thaliana GN=ABCF5 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9HG240.0B9HG24_POPTR ABC transporter family protein (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_217877 PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
cqu:CpipJ_CPIJ0028901e-82K06185ABCF2ATP-binding cassette, sub-family F, member 2
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL3289(13 genes,8 taxa):Arabidopsis thalianaAT5G09930.1
ORTHOMCL3289(13 genes,8 taxa):Arabidopsis thalianaAT5G64840.1
ORTHOMCL3289(13 genes,8 taxa):Brassica oleraceaBol020806
ORTHOMCL3289(13 genes,8 taxa):Brassica oleraceaBol043716
ORTHOMCL3289(13 genes,8 taxa):Brassica rapaBra009072
ORTHOMCL3289(13 genes,8 taxa):Brassica rapaBra031898
ORTHOMCL3289(13 genes,8 taxa):Vitis viniferaGSVIVT01022235001
ORTHOMCL3289(13 genes,8 taxa):Oryza sativaOs11t0603200-01
ORTHOMCL3289(13 genes,8 taxa):Populus trichocarpaPOPTR_0005s08680.1
ORTHOMCL3289(13 genes,8 taxa):Populus trichocarpaPOPTR_0007s06620.1
ORTHOMCL3289(13 genes,8 taxa):Sorghum bicolorSb05g023860.1
ORTHOMCL3289(13 genes,8 taxa):Carica papayaevm.TU.contig_37838.1
ORTHOMCL3289(13 genes,8 taxa):Carica papayaevm.TU.contig_44447.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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