Basic Information
Gene Model:Bol020777
Gene Family:Transcription Factor Families
Chromosome:Cun
Scaffold:Scaffold000121_P2
Sequence:
 | 
Gene Structure
Nucleotide Length:720 bp
Transcript Length:720 bp
Protein Length:239 aa
Strand:-
Location:Scaffold000121_P2: 983011 : 983730
Gene CDSs(1): 1-720 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50888HLH 173 233 8.433IPR001092Basic helix-loop-helix dimerisation region bHLH
Segsegseg 68 75 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0030528 Molecular Function transcription regulator activity
GO:0045449 Biological Process regulation of transcription
Swiss-Prot
Best HitE_value Description
Q9FMF44e-73SAC51_ARATH Transcription factor SAC51 OS=Arabidopsis thaliana GN=SAC51 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9S9F06e-22B9S9F0_RICCO Transcription factor, putative OS=Ricinus communis GN=RCOM_0884580 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL25338(2 genes,2 taxa):Brassica oleraceaBol020777
ORTHOMCL25338(2 genes,2 taxa):Brassica rapaBra031922
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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