Basic Information
Gene Model:Bol020751
Gene Family:Amino Acid/Auxin Permease AAAP Family
Chromosome:Cun
Scaffold:Scaffold000121_P2
Sequence:
 | 
Gene Structure
Nucleotide Length:1953 bp
Transcript Length:1401 bp
Protein Length:466 aa
Strand:+
Location:Scaffold000121_P2: 741218 : 743170
Gene CDSs(5): 1-61 | 150-383 | 464-557 | 642-856 | 1157-1953 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 442 452 NANot foundNot found
HMMPantherPTHR22950AMINO ACID TRANSPORT 9 462 1.1e-114Not foundNot found
HMMPfamPF01490Aa_trans 19 454 1.9e-161IPR013057Amino acid transporter, transmembrane
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
Q9FN040.0AAP4_ARATH Amino acid permease 4 OS=Arabidopsis thaliana GN=AAP4 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q703G10.0Q703G1_BRANA Amino acid permease OS=Brassica napus GN=aap2 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL141(52 genes,8 taxa):Arabidopsis thalianaAT1G44100.1
ORTHOMCL141(52 genes,8 taxa):Arabidopsis thalianaAT1G77380.1
ORTHOMCL141(52 genes,8 taxa):Arabidopsis thalianaAT5G09220.1
ORTHOMCL141(52 genes,8 taxa):Arabidopsis thalianaAT5G63850.1
ORTHOMCL141(52 genes,8 taxa):Brassica oleraceaBol006957
ORTHOMCL141(52 genes,8 taxa):Brassica oleraceaBol008792
ORTHOMCL141(52 genes,8 taxa):Brassica oleraceaBol020751
ORTHOMCL141(52 genes,8 taxa):Brassica oleraceaBol027558
ORTHOMCL141(52 genes,8 taxa):Brassica oleraceaBol033411
ORTHOMCL141(52 genes,8 taxa):Brassica oleraceaBol043234
ORTHOMCL141(52 genes,8 taxa):Brassica rapaBra006016
ORTHOMCL141(52 genes,8 taxa):Brassica rapaBra009371
ORTHOMCL141(52 genes,8 taxa):Brassica rapaBra014020
ORTHOMCL141(52 genes,8 taxa):Brassica rapaBra015673
ORTHOMCL141(52 genes,8 taxa):Brassica rapaBra024241
ORTHOMCL141(52 genes,8 taxa):Brassica rapaBra029199
ORTHOMCL141(52 genes,8 taxa):Brassica rapaBra032199
ORTHOMCL141(52 genes,8 taxa):Brassica rapaBra036939
ORTHOMCL141(52 genes,8 taxa):Vitis viniferaGSVIVT01008820001
ORTHOMCL141(52 genes,8 taxa):Vitis viniferaGSVIVT01024038001
ORTHOMCL141(52 genes,8 taxa):Oryza sativaOs02t0102200-01
ORTHOMCL141(52 genes,8 taxa):Oryza sativaOs05t0424000-01
ORTHOMCL141(52 genes,8 taxa):Oryza sativaOs11t0195600-01
ORTHOMCL141(52 genes,8 taxa):Oryza sativaOs12t0181500-01
ORTHOMCL141(52 genes,8 taxa):Oryza sativaOs12t0181600-01
ORTHOMCL141(52 genes,8 taxa):Oryza sativaOs12t0181600-02
ORTHOMCL141(52 genes,8 taxa):Oryza sativaOs12t0181600-03
ORTHOMCL141(52 genes,8 taxa):Populus trichocarpaPOPTR_0002s07960.1
ORTHOMCL141(52 genes,8 taxa):Populus trichocarpaPOPTR_0002s07960.2
ORTHOMCL141(52 genes,8 taxa):Populus trichocarpaPOPTR_0002s07970.1
ORTHOMCL141(52 genes,8 taxa):Populus trichocarpaPOPTR_0002s08000.1
ORTHOMCL141(52 genes,8 taxa):Populus trichocarpaPOPTR_0002s08040.1
ORTHOMCL141(52 genes,8 taxa):Populus trichocarpaPOPTR_0005s06990.1
ORTHOMCL141(52 genes,8 taxa):Populus trichocarpaPOPTR_0005s06990.2
ORTHOMCL141(52 genes,8 taxa):Populus trichocarpaPOPTR_0005s20390.1
ORTHOMCL141(52 genes,8 taxa):Populus trichocarpaPOPTR_0005s20400.1
ORTHOMCL141(52 genes,8 taxa):Populus trichocarpaPOPTR_0007s04710.1
ORTHOMCL141(52 genes,8 taxa):Populus trichocarpaPOPTR_0009s13610.1
ORTHOMCL141(52 genes,8 taxa):Sorghum bicolorSb03g041840.1
ORTHOMCL141(52 genes,8 taxa):Sorghum bicolorSb05g005980.1
ORTHOMCL141(52 genes,8 taxa):Sorghum bicolorSb05g006010.1
ORTHOMCL141(52 genes,8 taxa):Sorghum bicolorSb07g007570.1
ORTHOMCL141(52 genes,8 taxa):Sorghum bicolorSb08g004810.1
ORTHOMCL141(52 genes,8 taxa):Sorghum bicolorSb08g004960.1
ORTHOMCL141(52 genes,8 taxa):Sorghum bicolorSb08g004980.1
ORTHOMCL141(52 genes,8 taxa):Sorghum bicolorSb08g004990.1
ORTHOMCL141(52 genes,8 taxa):Sorghum bicolorSb08g005000.1
ORTHOMCL141(52 genes,8 taxa):Sorghum bicolorSb08g005010.1
ORTHOMCL141(52 genes,8 taxa):Sorghum bicolorSb09g020790.1
ORTHOMCL141(52 genes,8 taxa):Carica papayaevm.TU.supercontig_37.145
ORTHOMCL141(52 genes,8 taxa):Carica papayaevm.TU.supercontig_37.14
ORTHOMCL141(52 genes,8 taxa):Carica papayaevm.TU.supercontig_64.135
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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