Basic Information
Gene Model:Bol020746
Gene Family:ARIADNE Gene Families
Chromosome:Cun
Scaffold:Scaffold000121_P2
Sequence:
 | 
Gene Structure
Nucleotide Length:1884 bp
Transcript Length:1341 bp
Protein Length:446 aa
Strand:-
Location:Scaffold000121_P2: 712821 : 714704
Gene CDSs(2): 1-688 | 1232-1884 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
PatternScanPS01358ZF_RANBP2_1 410 429 NAIPR001876Zinc finger, RanBP2-type
HMMSmartSM00647no description 175 242 0.36IPR002867Zinc finger, C6HC-type
HMMSmartSM00647no description 96 164 1.4e-12IPR002867Zinc finger, C6HC-type
HMMPfamPF01485IBR 175 237 0.038IPR002867Zinc finger, C6HC-type
HMMPfamPF01485IBR 96 164 4.7e-07IPR002867Zinc finger, C6HC-type
HMMPantherPTHR11685ARIADNE RING ZINC FI 46 430 1.5e-139Not foundNot found
HMMPantherPTHR11685:SF9ARI-LIKE RING ZINC F 46 430 1.5e-139Not foundNot found
superfamilySSF57850RING/U-box 185 245 1.7e-06Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0005622 Cellular Component intracellular
GO:0008270 Molecular Function zinc ion binding
Swiss-Prot
Best HitE_value Description
Q9FFN91e-111ARI13_ARATH Probable E3 ubiquitin-protein ligase ARI13 OS=Arabidopsis thaliana GN=ARI13 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9HH716e-29B9HH71_POPTR Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_832209 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
pop:POPTR_8322096e-30K11968ARIH1ariadne-1
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL25331(2 genes,2 taxa):Brassica oleraceaBol020746
ORTHOMCL25331(2 genes,2 taxa):Brassica rapaBra029204
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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