Basic Information
Gene Model:Bol020652
Gene Family:Protein Kinase Gene Families
Chromosome:C05
Scaffold:Scaffold000121_P1
Sequence:
 | 
Gene Structure
Nucleotide Length:2374 bp
Transcript Length:2217 bp
Protein Length:738 aa
Strand:+
Location:C05: 16515742 : 16518115
Gene CDSs(3): 1-1193 | 1276-1461 | 1537-2374 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF57196EGF/Laminin 278 327 3.8e-12Not foundNot found
superfamilySSF57196EGF/Laminin 237 281 0.00034Not foundNot found
superfamilySSF56112Protein kinase-like 396 701 7.6e-73IPR011009Protein kinase-like domain
HMMSmartSM00219no description 411 681 2.9e-21IPR020635Tyrosine-protein kinase, subgroup, catalytic domain
HMMSmartSM00220no description 411 684 3.5e-26IPR002290Serine/threonine-protein kinase domain
HMMSmartSM00181no description 283 326 1.6IPR006210EGF-like
HMMSmartSM00179no description 280 326 1.3e-06IPR001881EGF-like calcium-binding
HMMSmartSM00181no description 235 279 0.15IPR006210EGF-like
Segsegseg 171 183 NANot foundNot found
PatternScanPS01187EGF_CA 280 310 NAIPR018097EGF-like calcium-binding, conserved site
PatternScanPS01186EGF_2 310 325 NAIPR013032EGF-like region, conserved site
PatternScanPS00010ASX_HYDROXYL 301 312 NAIPR000152EGF-type aspartate/asparagine hydroxylation site
PatternScanPS00108PROTEIN_KINASE_ST 532 544 NAIPR008271Serine/threonine-protein kinase, active site
HMMPantherPTHR23258SERINE-THREONINE PRO 248 732 3.2e-188Not foundNot found
HMMPantherPTHR23258:SF444WALL-ASSOCIATED PROT 248 732 3.2e-188Not foundNot found
HMMPfamPF00069Pkinase 411 609 3.3e-40IPR017442Serine/threonine-protein kinase-like domain
HMMPfamPF07645EGF_CA 280 325 5.2e-07IPR013091EGF calcium-binding
ProfileScanPS50026EGF_3 232 279 7.993IPR000742EGF-like, type 3
ProfileScanPS50026EGF_3 280 322 7.962IPR000742EGF-like, type 3
ProfileScanPS50011PROTEIN_KINASE_DOM 411 684 37.290IPR000719Protein kinase, catalytic domain
Gene3DG3DSA:3.30.200.20no description 392 486 1.2e-20Not foundNot found
Gene3DG3DSA:1.10.510.10no description 489 692 1.7e-46Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0004672 Molecular Function protein kinase activity
GO:0004674 Molecular Function protein serine/threonine kinase activity
GO:0005509 Molecular Function calcium ion binding
GO:0005524 Molecular Function ATP binding
GO:0006468 Biological Process protein phosphorylation
Swiss-Prot
Best HitE_value Description
Q9LMN70.0WAK5_ARATH Wall-associated receptor kinase 5 OS=Arabidopsis thaliana GN=WAK5 PE=2 SV=1
TrEMBL
Best HitE_value Description
A7QLU30.0A7QLU3_VITVI Chromosome chr18 scaffold_122, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00001785001 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT5G389905e-55K04733IRAK4interleukin-1 receptor-associated kinase 4
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL87(65 genes,8 taxa):Arabidopsis thalianaAT1G21210.1
ORTHOMCL87(65 genes,8 taxa):Arabidopsis thalianaAT1G21230.1
ORTHOMCL87(65 genes,8 taxa):Arabidopsis thalianaAT1G21240.1
ORTHOMCL87(65 genes,8 taxa):Arabidopsis thalianaAT1G21250.1
ORTHOMCL87(65 genes,8 taxa):Arabidopsis thalianaAT1G21270.1
ORTHOMCL87(65 genes,8 taxa):Arabidopsis thalianaAT3G25490.1
ORTHOMCL87(65 genes,8 taxa):Brassica oleraceaBol007036
ORTHOMCL87(65 genes,8 taxa):Brassica oleraceaBol007037
ORTHOMCL87(65 genes,8 taxa):Brassica oleraceaBol014314
ORTHOMCL87(65 genes,8 taxa):Brassica oleraceaBol020649
ORTHOMCL87(65 genes,8 taxa):Brassica oleraceaBol020652
ORTHOMCL87(65 genes,8 taxa):Brassica oleraceaBol020654
ORTHOMCL87(65 genes,8 taxa):Brassica oleraceaBol025489
ORTHOMCL87(65 genes,8 taxa):Brassica oleraceaBol025490
ORTHOMCL87(65 genes,8 taxa):Brassica oleraceaBol027455
ORTHOMCL87(65 genes,8 taxa):Brassica oleraceaBol027456
ORTHOMCL87(65 genes,8 taxa):Brassica oleraceaBol027457
ORTHOMCL87(65 genes,8 taxa):Brassica rapaBra012272
ORTHOMCL87(65 genes,8 taxa):Brassica rapaBra012273
ORTHOMCL87(65 genes,8 taxa):Brassica rapaBra016426
ORTHOMCL87(65 genes,8 taxa):Brassica rapaBra016427
ORTHOMCL87(65 genes,8 taxa):Brassica rapaBra016428
ORTHOMCL87(65 genes,8 taxa):Brassica rapaBra025882
ORTHOMCL87(65 genes,8 taxa):Brassica rapaBra025883
ORTHOMCL87(65 genes,8 taxa):Brassica rapaBra025884
ORTHOMCL87(65 genes,8 taxa):Brassica rapaBra025886
ORTHOMCL87(65 genes,8 taxa):Vitis viniferaGSVIVT01021671001
ORTHOMCL87(65 genes,8 taxa):Vitis viniferaGSVIVT01021673001
ORTHOMCL87(65 genes,8 taxa):Vitis viniferaGSVIVT01021675001
ORTHOMCL87(65 genes,8 taxa):Vitis viniferaGSVIVT01021682001
ORTHOMCL87(65 genes,8 taxa):Vitis viniferaGSVIVT01021685001
ORTHOMCL87(65 genes,8 taxa):Vitis viniferaGSVIVT01021686001
ORTHOMCL87(65 genes,8 taxa):Vitis viniferaGSVIVT01021694001
ORTHOMCL87(65 genes,8 taxa):Oryza sativaOs02t0111600-01
ORTHOMCL87(65 genes,8 taxa):Oryza sativaOs02t0623600-01
ORTHOMCL87(65 genes,8 taxa):Oryza sativaOs02t0624100-00
ORTHOMCL87(65 genes,8 taxa):Oryza sativaOs04t0598900-01
ORTHOMCL87(65 genes,8 taxa):Oryza sativaOs04t0599000-02
ORTHOMCL87(65 genes,8 taxa):Oryza sativaOs06t0142500-00
ORTHOMCL87(65 genes,8 taxa):Oryza sativaOs06t0170100-00
ORTHOMCL87(65 genes,8 taxa):Oryza sativaOs06t0705200-00
ORTHOMCL87(65 genes,8 taxa):Oryza sativaOs06t0706600-00
ORTHOMCL87(65 genes,8 taxa):Populus trichocarpaPOPTR_0002s07650.1
ORTHOMCL87(65 genes,8 taxa):Populus trichocarpaPOPTR_0002s07660.1
ORTHOMCL87(65 genes,8 taxa):Populus trichocarpaPOPTR_0002s07670.1
ORTHOMCL87(65 genes,8 taxa):Sorghum bicolorSb01g013060.1
ORTHOMCL87(65 genes,8 taxa):Sorghum bicolorSb02g002020.1
ORTHOMCL87(65 genes,8 taxa):Sorghum bicolorSb02g002110.1
ORTHOMCL87(65 genes,8 taxa):Sorghum bicolorSb02g021500.1
ORTHOMCL87(65 genes,8 taxa):Sorghum bicolorSb03g014450.1
ORTHOMCL87(65 genes,8 taxa):Sorghum bicolorSb04g000880.1
ORTHOMCL87(65 genes,8 taxa):Sorghum bicolorSb04g026470.1
ORTHOMCL87(65 genes,8 taxa):Sorghum bicolorSb04g037220.1
ORTHOMCL87(65 genes,8 taxa):Sorghum bicolorSb06g022700.1
ORTHOMCL87(65 genes,8 taxa):Sorghum bicolorSb06g022710.1
ORTHOMCL87(65 genes,8 taxa):Sorghum bicolorSb06g030770.1
ORTHOMCL87(65 genes,8 taxa):Sorghum bicolorSb06g030960.1
ORTHOMCL87(65 genes,8 taxa):Sorghum bicolorSb06g030970.1
ORTHOMCL87(65 genes,8 taxa):Sorghum bicolorSb08g018520.1
ORTHOMCL87(65 genes,8 taxa):Sorghum bicolorSb10g004800.1
ORTHOMCL87(65 genes,8 taxa):Sorghum bicolorSb10g004810.1
ORTHOMCL87(65 genes,8 taxa):Sorghum bicolorSb10g004830.1
ORTHOMCL87(65 genes,8 taxa):Carica papayaevm.TU.supercontig_1461.1
ORTHOMCL87(65 genes,8 taxa):Carica papayaevm.TU.supercontig_64.155
ORTHOMCL87(65 genes,8 taxa):Carica papayaevm.TU.supercontig_64.156
Tandem Duplication
ClusterGene Num.Gene List
Cluster_246Bol020648 Bol020649 Bol020650 Bol020651 Bol020652 Bol020654 
Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:16419418..17459546 (+)A.thalianaChr1:28822186..29339755 (+)30
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:13735892..17408196 (+)B.rapaA08:1888770..2871761 (-)119
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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