Basic Information
Gene Model:Bol020600
Gene Family:Not classificated
Chromosome:C03
Scaffold:Scaffold000122_P2
Sequence:
 | 
Gene Structure
Nucleotide Length:1519 bp
Transcript Length:477 bp
Protein Length:158 aa
Strand:+
Location:C03: 11654887 : 11656405
Gene CDSs(5): 1-97 | 792-862 | 943-1020 | 1143-1225 | 1372-1519 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00072Response_reg 26 145 2.2e-13IPR001789Signal transduction response regulator, receiver region
Segsegseg 16 25 NANot foundNot found
HMMPantherPTHR23283SENSOR HISTIDINE KIN 14 158 1.7e-16Not foundNot found
HMMPantherPTHR23283:SF42RECEPTOR HISTIDINE K 14 158 1.7e-16Not foundNot found
superfamilySSF52172CheY-like 21 155 6.1e-25IPR011006CheY-like
ProfileScanPS50110RESPONSE_REGULATORY 25 154 23.881IPR001789Signal transduction response regulator, receiver region
HMMSmartSM00448no description 24 150 1.3e-16IPR001789Signal transduction response regulator, receiver region
Gene3DG3DSA:3.40.50.2300no description 18 154 2.7e-21Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0000156 Molecular Function two-component response regulator activity
GO:0000160 Biological Process two-component signal transduction system (phosphorelay)
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q9SHC22e-72ARR16_ARATH Two-component response regulator ARR16 OS=Arabidopsis thaliana GN=ARR16 PE=1 SV=1
TrEMBL
Best HitE_value Description
B4G2943e-71B4G294_ARATH At2g40670 OS=Arabidopsis thaliana PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT2G406703e-72K14492ARR-Atwo-component response regulator ARR-A family
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL9634(8 genes,6 taxa):Arabidopsis thalianaAT2G40670.1
ORTHOMCL9634(8 genes,6 taxa):Arabidopsis thalianaAT3G56380.1
ORTHOMCL9634(8 genes,6 taxa):Brassica oleraceaBol020600
ORTHOMCL9634(8 genes,6 taxa):Brassica rapaBra000199
ORTHOMCL9634(8 genes,6 taxa):Brassica rapaBra007242
ORTHOMCL9634(8 genes,6 taxa):Vitis viniferaGSVIVT01032667001
ORTHOMCL9634(8 genes,6 taxa):Populus trichocarpaPOPTR_0019s08690.1
ORTHOMCL9634(8 genes,6 taxa):Carica papayaevm.TU.supercontig_19.55
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:11545698..12240200 (+)A.thalianaChr2:16844864..17551175 (+)64
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:11573797..12276898 (+)B.rapaA05:17764283..18311279 (+)41
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
JAT2G406701697025816971207Chr2Subgenome_II219
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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