Basic Information
Gene Model:Bol020587
Gene Family:Protein Kinase Gene Families
Chromosome:C03
Scaffold:Scaffold000122_P2
Sequence:
 | 
Gene Structure
Nucleotide Length:2989 bp
Transcript Length:1974 bp
Protein Length:657 aa
Strand:-
Location:C03: 11760935 : 11763923
Gene CDSs(11): 1-115 | 196-313 | 403-569 | 650-717 | 808-1031 | 1175-1226 | 1425-1971 | 2072-2138 | 2218-2437 | 2517-2717 | 2795-2989 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF56112Protein kinase-like 21 320 6.6e-65IPR011009Protein kinase-like domain
superfamilySSF81606Protein serine/threo 370 652 9.8e-72IPR001932Protein phosphatase 2C-related
ProfileScanPS50011PROTEIN_KINASE_DOM 30 315 40.202IPR000719Protein kinase, catalytic domain
HMMSmartSM00331no description 406 647 3.9e-26IPR001932Protein phosphatase 2C-related
HMMSmartSM00332no description 381 645 4.9e-82IPR001932Protein phosphatase 2C-related
HMMSmartSM00219no description 30 311 1e-21IPR020635Tyrosine-protein kinase, subgroup, catalytic domain
HMMSmartSM00220no description 30 315 3.1e-46IPR002290Serine/threonine-protein kinase domain
HMMPantherPTHR23257SERINE-THREONINE PRO 28 318 9.7e-110Not foundNot found
HMMPantherPTHR23257:SF91C-MOS 28 318 9.7e-110Not foundNot found
Gene3DG3DSA:3.60.40.10no description 369 649 1e-67IPR001932Protein phosphatase 2C-related
Gene3DG3DSA:1.10.510.10no description 104 339 2e-46Not foundNot found
Gene3DG3DSA:3.30.200.20no description 30 104 1.3e-07Not foundNot found
Segsegseg 447 460 NANot foundNot found
Segsegseg 303 318 NANot foundNot found
HMMPfamPF00481PP2C 390 640 7.9e-98IPR014045Protein phosphatase 2C, N-terminal
HMMPfamPF00069Pkinase 30 311 3.2e-48IPR017442Serine/threonine-protein kinase-like domain
PatternScanPS00108PROTEIN_KINASE_ST 145 157 NAIPR008271Serine/threonine-protein kinase, active site
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
GO:0004672 Molecular Function protein kinase activity
GO:0004674 Molecular Function protein serine/threonine kinase activity
GO:0005524 Molecular Function ATP binding
GO:0006468 Biological Process protein phosphorylation
Swiss-Prot
Best HitE_value Description
Q940A20.0P2C31_ARATH Protein kinase and PP2C-like domain-containing protein OS=Arabidopsis thaliana GN=At2g40860/At2g40870 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9SJN70.0B9SJN7_RICCO Protein kinase, putative OS=Ricinus communis GN=RCOM_1106730 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
rcu:RCOM_10535702e-36K01090E3.1.3.16protein phosphatase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL9640(8 genes,8 taxa):Arabidopsis thalianaAT2G40860.1
ORTHOMCL9640(8 genes,8 taxa):Brassica oleraceaBol020587
ORTHOMCL9640(8 genes,8 taxa):Brassica rapaBra000209
ORTHOMCL9640(8 genes,8 taxa):Vitis viniferaGSVIVT01025802001
ORTHOMCL9640(8 genes,8 taxa):Oryza sativaOs01t0541900-01
ORTHOMCL9640(8 genes,8 taxa):Populus trichocarpaPOPTR_0016s03060.1
ORTHOMCL9640(8 genes,8 taxa):Sorghum bicolorSb03g024240.1
ORTHOMCL9640(8 genes,8 taxa):Carica papayaevm.TU.supercontig_37.34
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:11545698..12240200 (+)A.thalianaChr2:16844864..17551175 (+)64
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:11573797..12276898 (+)B.rapaA05:17764283..18311279 (+)41
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
JAT2G408601705356817057182Chr2Subgenome_II219
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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